Factsheet for PGSC0003DMT400055713

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g098270.2.1	Tomato	cytosol	90.39	95.61
CDY04708	Canola	plastid	42.14	69.68
PGSC0003DMT400080722	Potato	extracellular	69.43	69.13
CDY25786	Canola	cytosol	64.63	66.37
Bra024602.1-P	Field mustard	cytosol	63.97	66.29
Bra012375.1-P	Field mustard	cytosol	64.41	66.14
CDY54292	Canola	cytosol	64.41	66.14
AT1G23460.1	Thale cress	extracellular	65.72	65.43
Bra016345.1-P	Field mustard	extracellular	66.81	65.38
CDY11585	Canola	extracellular	63.32	62.1
Bra016213.1-P	Field mustard	extracellular	63.1	61.88
CDY47139	Canola	extracellular	63.1	61.88
GSMUA_Achr7P01870_001	Banana	cytosol	57.42	59.77
CDY44150	Canola	extracellular, golgi, plastid	65.5	59.76
AT1G70500.1	Thale cress	extracellular	60.92	59.62
GSMUA_Achr4P22100_001	Banana	extracellular	57.42	56.68
CDY41445	Canola	endoplasmic reticulum	66.81	55.04
EES04449	Sorghum	extracellular	50.22	44.23
Zm00001d015129_P001	Maize	mitochondrion	49.78	44.19
Os02t0130200-01	Rice	extracellular, golgi	47.6	42.91
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	49.13	42.86
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	49.34	42.8
TraesCSU01G113500.1	Wheat	extracellular, golgi, vacuole	49.13	42.61
HORVU6Hr1G015390.2	Barley	extracellular, golgi	48.91	42.42
PGSC0003DMT400001638	Potato	extracellular, plastid	40.83	41.65
PGSC0003DMT400017691	Potato	extracellular	30.79	40.17
PGSC0003DMT400008955	Potato	extracellular	28.6	37.64
PGSC0003DMT400007095	Potato	cytosol	35.37	37.24
PGSC0003DMT400056828	Potato	extracellular	32.31	37.19
PGSC0003DMT400070039	Potato	cytosol	32.53	36.34
PGSC0003DMT400077010	Potato	cytosol	36.68	36.29
PGSC0003DMT400013344	Potato	extracellular	35.81	34.75
KRG99363	Soybean	extracellular	65.5	34.05
PGSC0003DMT400075723	Potato	extracellular	35.59	33.54
PGSC0003DMT400035162	Potato	extracellular	36.68	32.88
PGSC0003DMT400035101	Potato	extracellular, golgi	31.44	29.94

Protein Annotations

EntrezGene:102579939	Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334
UniProt:M1BYD7	PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400021630	PGSC:PGSC0003DMG400021630	EnsemblPlants:PGSC0003DMT400055713	ScanProsite:PS00502
PANTHER:PTHR31375	PANTHER:PTHR31375:SF29	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI000295A065	RefSeq:XP_015159532.1	SEG:seg	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400021630]

Coordinates

chr9:+:61120520..61124079

Molecular Weight (calculated)

49983.7 Da

IEP (calculated)

4.860

GRAVY (calculated)

-0.313

Length

458 amino acids

Sequence
(BLAST)

001: MVKTNTKIIF ILFFVFLLES LGSAHDGGKI NILEEEILSD FDDIFYNEDE DEDEIFDVWR NGRGNKNLVN VDTCGAVGDG TSDDTKAFED AWKEACSKRR
101: SVFMVPSGRT YLVNATKFNG PCANGLIIQI DGTIVAPSDP ENWDPKSPKA WLVFSNLTGV TFQGNGIIDG SGSKWWEASC KKNKSNACKS APRALTIDLS
201: SGIRVKGLTF QNSQQMHFVI SRSNSVRVNG VKVSSPGDSP NTDGIHISES TNVVLQDCKI GTGDDCISIV NASSNIKMKN IYCGPGHGIS IGSLGKDESI
301: GVVNRVVLDT AYLKGTTNGL RIKTWQGGSG YVRTVRFQNV QMEDVSNPII IDQFYCDSQK PCQNQTSAVE ISEVLYRNVS GTTKSKKAMK FACSDTVPCS
401: HITLDNVNLE ARDGTAEVYC NSATGIIAGY VHPEAECLNS NDKKIEQEIE ECNVHDEL

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.