Factsheet for Bra016345.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 10
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024602.1-P	Field mustard	cytosol	87.61	92.76
Bra012375.1-P	Field mustard	cytosol	87.18	91.48
AT1G23460.1	Thale cress	extracellular	88.25	89.78
CDY41445	Canola	endoplasmic reticulum	99.15	83.45
Bra016213.1-P	Field mustard	extracellular	75.85	76.02
Solyc09g098270.2.1	Tomato	cytosol	64.32	69.52
PGSC0003DMT400055713	Potato	extracellular	65.38	66.81
Solyc04g025440.2.1	Tomato	extracellular	65.38	66.52
PGSC0003DMT400080722	Potato	extracellular	65.17	66.3
GSMUA_Achr7P01870_001	Banana	cytosol	55.77	59.32
GSMUA_Achr4P22100_001	Banana	extracellular	55.77	56.25
EES04449	Sorghum	extracellular	51.28	46.15
Zm00001d015129_P001	Maize	mitochondrion	49.36	44.77
Os02t0130200-01	Rice	extracellular, golgi	48.5	44.69
HORVU6Hr1G015390.2	Barley	extracellular, golgi	50.0	44.32
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	50.0	44.32
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	49.36	44.0
TraesCSU01G113500.1	Wheat	extracellular, golgi, vacuole	49.36	43.75
Bra029690.1-P	Field mustard	cytosol	35.9	41.38
Bra016911.1-P	Field mustard	extracellular	37.82	40.88
Bra003555.1-P	Field mustard	extracellular	38.89	40.72
Bra004655.1-P	Field mustard	extracellular	36.54	39.95
Bra007332.1-P	Field mustard	extracellular	36.75	39.81
Bra008748.1-P	Field mustard	extracellular	37.18	39.64
Bra003286.1-P	Field mustard	extracellular	36.54	39.49
Bra001279.1-P	Field mustard	extracellular	36.54	39.13
Bra027926.1-P	Field mustard	extracellular	36.11	38.85
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	36.97	38.62
Bra025631.1-P	Field mustard	extracellular	32.27	35.78
Bra025099.1-P	Field mustard	extracellular	30.56	35.75
Bra000911.1-P	Field mustard	extracellular, vacuole	36.54	35.19
KRG99363	Soybean	extracellular	65.6	34.85
Bra032600.1-P	Field mustard	extracellular	36.54	34.83
Bra033328.1-P	Field mustard	extracellular	36.54	34.83
Bra025103.1-P	Field mustard	extracellular	29.7	34.75
Bra018707.1-P	Field mustard	extracellular	34.83	34.53
Bra001605.1-P	Field mustard	extracellular	32.69	33.85
Bra025216.1-P	Field mustard	extracellular	33.76	33.62
Bra008493.1-P	Field mustard	extracellular	27.78	33.33
Bra027210.1-P	Field mustard	extracellular	32.27	33.11
Bra027211.1-P	Field mustard	extracellular	31.41	32.59
Bra011341.1-P	Field mustard	cytosol	26.92	32.06
Bra031724.1-P	Field mustard	extracellular	34.62	31.46
Bra008572.1-P	Field mustard	extracellular	28.85	31.11
Bra027148.1-P	Field mustard	extracellular	35.47	30.97
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	35.26	30.96
Bra023600.1-P	Field mustard	extracellular	28.21	30.84
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	34.83	30.7
Bra040077.1-P	Field mustard	extracellular	20.09	25.75

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra016345	EnsemblPlants:Bra016345.1	EnsemblPlants:Bra016345.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4DIL8	PFAM:PF00295	ScanProsite:PS00502
PANTHER:PTHR31375	PANTHER:PTHR31375:SF29	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	TMHMM:TMhelix
UniParc:UPI00025463DF	SEG:seg	:	:	:	:

Description

AT1G23460 (E=6e-234) | polygalacturonase

Coordinates

chrA08:-:17980610..17982688

Molecular Weight (calculated)

50625.7 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.251

Length

468 amino acids

Sequence
(BLAST)

001: MMDKLFILSL IGILMVTAYG VAAKMVYTDL DILEKLENFD IPEDDADDYD TKLFDWPSFT SRSSGKNLVN VDTFGAAGDG ISDDTQAFVS AWNKACGMPK
101: SVLLVPQGRT YLVNATKFNG PCETKLVIQI DGKIVAPDEP SNWDPKFQRI WLEFSKLKGV VFQGNGVIDG SGSKWWAASC KKNKSNPCKS APTALTIESS
201: SGVKVTGLTI QNSQQMNFII ARSNSVRVSK VMVSSPGDSP NTDGIHITGS TNVVLQDCKI GTGDDCVSIV NASSNIKMKK IYCGPGHGIS IGSLGNNNST
301: GIVTNVVLDT AFLKETTNGL RIKTYQGGSG YVQDVRFTNV QMQDVSNPIL IDQFYCDNPT SCQNQTSAVK ISQIMYRNIT GTTKSEKAIK FACSDTVPCS
401: HIVLNNVNLE GRDGQVEAYC NSAEGFGYGV IHPSADCLYS HDNKGLDQSH KSEPETVTEE AETGHDEL

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.