Factsheet for Bra025099.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39404	Canola	extracellular	98.25	98.5
Bra025103.1-P	Field mustard	extracellular	88.5	88.5
AT5G44830.1	Thale cress	extracellular	63.0	75.9
AT5G44840.1	Thale cress	extracellular	73.5	75.19
PGSC0003DMT400056828	Potato	extracellular	41.75	41.96
PGSC0003DMT400008955	Potato	extracellular	36.0	41.38
Bra023600.1-P	Field mustard	extracellular	43.25	40.42
Bra001605.1-P	Field mustard	extracellular	45.0	39.82
TraesCS2D01G402100.1	Wheat	extracellular	40.0	39.51
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	40.0	39.51
Bra027210.1-P	Field mustard	extracellular	45.0	39.47
TraesCS2B01G423300.1	Wheat	extracellular	39.5	39.4
Bra011341.1-P	Field mustard	cytosol	38.5	39.19
Bra008572.1-P	Field mustard	extracellular	42.5	39.17
HORVU2Hr1G096130.1	Barley	extracellular	39.25	38.77
Bra027211.1-P	Field mustard	extracellular	43.5	38.58
TraesCS2B01G423400.1	Wheat	plastid	33.75	38.46
TraesCS2D01G402200.1	Wheat	extracellular	37.5	38.36
TraesCS2A01G405600.1	Wheat	extracellular	30.5	38.24
TraesCS2D01G402300.1	Wheat	extracellular	31.5	37.84
TraesCS2A01G405100.1	Wheat	extracellular	39.25	37.65
KXG26899	Sorghum	extracellular	39.5	37.62
TraesCS2B01G423200.1	Wheat	extracellular	39.25	36.94
GSMUA_Achr11P...	Banana	extracellular	37.75	36.3
TraesCS2D01G402000.1	Wheat	extracellular	38.75	36.22
KRH05150	Soybean	extracellular	24.25	36.06
GSMUA_Achr9P22320_001	Banana	extracellular	37.0	35.84
Bra025631.1-P	Field mustard	extracellular	37.75	35.78
Bra040077.1-P	Field mustard	extracellular	32.25	35.34
Bra016911.1-P	Field mustard	extracellular	37.75	34.87
Bra029690.1-P	Field mustard	cytosol	35.0	34.48
Bra003555.1-P	Field mustard	extracellular	38.5	34.45
GSMUA_Achr4P13200_001	Banana	extracellular	36.25	34.36
Bra007332.1-P	Field mustard	extracellular	36.75	34.03
Bra008748.1-P	Field mustard	extracellular	37.25	33.94
Bra001279.1-P	Field mustard	extracellular	37.0	33.87
Bra003286.1-P	Field mustard	extracellular	36.5	33.72
Bra004655.1-P	Field mustard	extracellular	36.0	33.64
Zm00001d039668_P001	Maize	plastid	36.5	33.41
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	37.25	33.26
Bra008493.1-P	Field mustard	extracellular	32.25	33.08
Bra024602.1-P	Field mustard	cytosol	34.75	31.45
Bra027926.1-P	Field mustard	extracellular	33.75	31.03
Bra012375.1-P	Field mustard	cytosol	34.25	30.72
Bra016345.1-P	Field mustard	extracellular	35.75	30.56
Bra016213.1-P	Field mustard	extracellular	35.0	29.98
Bra025216.1-P	Field mustard	extracellular	33.75	28.72
Bra032600.1-P	Field mustard	extracellular	34.5	28.11
Bra000911.1-P	Field mustard	extracellular, vacuole	33.75	27.78
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	36.75	27.68
Os01t0172900-00	Rice	nucleus	20.25	27.46
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	36.5	27.39
Bra031724.1-P	Field mustard	extracellular	35.25	27.38
Bra018707.1-P	Field mustard	extracellular	32.25	27.33
Bra033328.1-P	Field mustard	extracellular	33.0	26.88
Bra027148.1-P	Field mustard	extracellular	36.0	26.87
GSMUA_Achr4P06370_001	Banana	extracellular	38.5	20.42

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra025099	EnsemblPlants:Bra025099.1	EnsemblPlants:Bra025099.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4E8J3	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF42	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI000253F5C8	:	:

Description

AT4G35670 (E=7e-132) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA06:+:25145340..25148312

Molecular Weight (calculated)

43465.7 Da

IEP (calculated)

6.768

GRAVY (calculated)

-0.165

Length

400 amino acids

Sequence
(BLAST)

001: MKSSYLRHRM EIIVRVVFVL TLLNFGFVNS QIYDVLKFGA EGDGTTDDSK AFVAAWKAMC SSGGSNKTLL IPSDNTFLLQ PLVFQGPCNS PSVQVQLDGK
101: IVAPLNKAAW SGLKSYEWVS FHKIIGLTVL GSGTINGRGS SFWEANMPAS KRPTQLHFKG CNNLEINGIT SFDSPRNHIS IRDCRQVKIT QIKLIAPGDS
201: PNTDGIDIST STNVEIYDTI VGTGDDCVAL NSGSININIT RMQCGPGHGI SVGSLGRDGE ESIVENVQVT NCTFSETTNG ARIKTWPNGK GYARNIVFKD
301: ITLTETKNPI IIDQHYMDKG HIHVEESSAV AISNVIFTDI HGTSQKDEII KIDCSGVTSC KDIVLDRIDI TTVDGNKPII ECSNAYGKST NTYDGCLKTK

Best Arabidopsis Sequence Match ( AT5G44840.1 )
(BLAST)

001: MEIILRGVFL LTLLHSILVN GQIYDVLEFG ADGNGITDDS KAFVKAWSAM CGSGGNSKTF IIPSNKTFLL QPLTFQGPCK SPSVQVKFDG KIVAPINKAA
101: WSDYKLFRWV SFKEIIGLTV NGSGTIHGRG SSFWKQGLPA SKRPTQLHFQ RCNDLMITGI TSFNSPKNHI SISECKRVKI TKIKLVAPHD SPNTDGINIS
201: ESSDVDIYDT VIGTGDDCVA INSGSMNINI ARMNCGPGHG ISVGSVGRDG EESIVENVQV TNCTFIRTDN GARIKTWPNG KGYAKNILFK SLTFRETKNP
301: IIIDQNYVDK GRLDVEESAV AISNVTFTDL RGTSKLDEII KIDCSKVTYC KDIVLDKIDI ATVDGNKPIV ECSNVYGKSI NANEANGCFK T

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT5G44840]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.