Factsheet for Bra025103.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39399	Canola	extracellular	98.25	98.25
Bra025099.1-P	Field mustard	extracellular	88.5	88.5
AT5G44830.1	Thale cress	extracellular	62.0	74.7
AT5G44840.1	Thale cress	extracellular	72.0	73.66
PGSC0003DMT400056828	Potato	extracellular	40.5	40.7
PGSC0003DMT400008955	Potato	extracellular	34.75	39.94
TraesCS2B01G423300.1	Wheat	extracellular	39.5	39.4
Bra023600.1-P	Field mustard	extracellular	42.0	39.25
Bra001605.1-P	Field mustard	extracellular	44.25	39.16
TraesCS2D01G402100.1	Wheat	extracellular	39.5	39.01
Bra027210.1-P	Field mustard	extracellular	44.25	38.82
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	39.0	38.52
TraesCS2B01G423400.1	Wheat	plastid	33.75	38.46
HORVU2Hr1G096130.1	Barley	extracellular	38.75	38.27
TraesCS2A01G405600.1	Wheat	extracellular	30.5	38.24
Bra027211.1-P	Field mustard	extracellular	43.0	38.14
TraesCS2D01G402200.1	Wheat	extracellular	37.25	38.11
Bra011341.1-P	Field mustard	cytosol	37.25	37.91
Bra008572.1-P	Field mustard	extracellular	41.0	37.79
KXG26899	Sorghum	extracellular	39.25	37.38
TraesCS2D01G402300.1	Wheat	extracellular	31.0	37.24
TraesCS2A01G405100.1	Wheat	extracellular	38.75	37.17
TraesCS2B01G423200.1	Wheat	extracellular	38.75	36.47
TraesCS2D01G402000.1	Wheat	extracellular	38.25	35.75
GSMUA_Achr9P22320_001	Banana	extracellular	36.5	35.35
Bra040077.1-P	Field mustard	extracellular	32.25	35.34
GSMUA_Achr11P...	Banana	extracellular	36.75	35.34
KRH05150	Soybean	extracellular	23.75	35.32
Bra016911.1-P	Field mustard	extracellular	37.5	34.64
Bra007332.1-P	Field mustard	extracellular	37.0	34.26
Bra029690.1-P	Field mustard	cytosol	34.5	33.99
GSMUA_Achr4P13200_001	Banana	extracellular	35.5	33.65
Bra003286.1-P	Field mustard	extracellular	36.25	33.49
Bra025631.1-P	Field mustard	extracellular	35.25	33.41
Bra004655.1-P	Field mustard	extracellular	35.75	33.41
Bra001279.1-P	Field mustard	extracellular	36.5	33.41
Bra008748.1-P	Field mustard	extracellular	36.5	33.26
Bra003555.1-P	Field mustard	extracellular	37.0	33.11
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	37.0	33.04
Bra008493.1-P	Field mustard	extracellular	31.0	31.79
Zm00001d039668_P001	Maize	plastid	34.25	31.35
Bra024602.1-P	Field mustard	cytosol	33.5	30.32
Bra012375.1-P	Field mustard	cytosol	33.5	30.04
Bra016345.1-P	Field mustard	extracellular	34.75	29.7
Bra027926.1-P	Field mustard	extracellular	32.25	29.66
Bra016213.1-P	Field mustard	extracellular	33.75	28.91
Bra025216.1-P	Field mustard	extracellular	33.25	28.3
Bra032600.1-P	Field mustard	extracellular	34.5	28.11
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	36.25	27.31
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	36.0	27.02
Bra031724.1-P	Field mustard	extracellular	34.75	26.99
Bra027148.1-P	Field mustard	extracellular	36.0	26.87
Bra000911.1-P	Field mustard	extracellular, vacuole	32.5	26.75
Bra018707.1-P	Field mustard	extracellular	31.25	26.48
Bra033328.1-P	Field mustard	extracellular	32.5	26.48
Os01t0172900-00	Rice	nucleus	19.25	26.1
GSMUA_Achr4P06370_001	Banana	extracellular	36.75	19.5

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra025103	EnsemblPlants:Bra025103.1	EnsemblPlants:Bra025103.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4E8J7	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF42	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI000253F5CC	SEG:seg	:

Description

AT4G35670 (E=5e-130) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA06:-:25175466..25178222

Molecular Weight (calculated)

43372.2 Da

IEP (calculated)

4.782

GRAVY (calculated)

-0.153

Length

400 amino acids

Sequence
(BLAST)

001: MKSSYHPHIM EIIVRVVFVL TVVNFGFLNG QVYDVLKFGA KGDGTTNDSE AFVEAWKAMC SSGGSNKTLL IPSDNTFLLQ PLVFQGPCNS PSVQVKLEGK
101: IVAPLNKAAW SDFKSYEWVS FNKIIGLTVL GSGTINGRGS SFWEANMSAS KRPTQLYFEG CNNLEINGIA SLDSPRNHIS IHNCTQVKIT QIKLIAPGDS
201: PNTDGIDIST STDVEIYDTI VGTGDDCVAL NSGSININIT RMQCGPGHGI SVGSLGKDGE ESIVENVQVT NCTFNETNNG ARIKTWPNGK GYARNIVFMD
301: ITLTETKNPI IIDQQYIDKG RIDVEESSAV AISNVTFTNF HGTSGQDEII KIDCSEVTYC KDIVLDRINI TTVDGNKPIV ECSNAYGNST NAYDGCLKTQ

Best Arabidopsis Sequence Match ( AT5G44840.1 )
(BLAST)

001: MEIILRGVFL LTLLHSILVN GQIYDVLEFG ADGNGITDDS KAFVKAWSAM CGSGGNSKTF IIPSNKTFLL QPLTFQGPCK SPSVQVKFDG KIVAPINKAA
101: WSDYKLFRWV SFKEIIGLTV NGSGTIHGRG SSFWKQGLPA SKRPTQLHFQ RCNDLMITGI TSFNSPKNHI SISECKRVKI TKIKLVAPHD SPNTDGINIS
201: ESSDVDIYDT VIGTGDDCVA INSGSMNINI ARMNCGPGHG ISVGSVGRDG EESIVENVQV TNCTFIRTDN GARIKTWPNG KGYAKNILFK SLTFRETKNP
301: IIIDQNYVDK GRLDVEESAV AISNVTFTDL RGTSKLDEII KIDCSKVTYC KDIVLDKIDI ATVDGNKPIV ECSNVYGKSI NANEANGCFK T

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT5G44840]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.