Factsheet for Bra032600.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 7
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77909	Canola	extracellular	98.37	98.37
Bra033328.1-P	Field mustard	extracellular	93.08	93.08
CDY67535	Canola	extracellular	58.86	92.93
AT1G02460.1	Thale cress	extracellular	90.22	90.22
PGSC0003DMT400013344	Potato	extracellular	64.36	66.95
KRG96576	Soybean	extracellular	62.93	66.88
KRH68311	Soybean	extracellular	62.93	66.88
Bra000911.1-P	Field mustard	extracellular, vacuole	66.19	66.87
KRH69173	Soybean	extracellular	64.15	66.6
Solyc01g079130.1.1	Tomato	extracellular	63.95	66.53
KRH31755	Soybean	extracellular	64.15	66.32
VIT_07s0005g02090.t01	Wine grape	extracellular	62.12	65.59
Os01t0296200-00	Rice	extracellular	33.4	61.65
GSMUA_Achr11P...	Banana	extracellular	53.16	59.86
Bra027926.1-P	Field mustard	extracellular	50.51	57.01
HORVU1Hr1G067840.1	Barley	extracellular, plastid	54.58	56.3
TraesCS1A01G311100.1	Wheat	extracellular	55.19	55.99
TraesCS1D01G311000.1	Wheat	extracellular	54.58	55.95
TraesCS1B01G322500.1	Wheat	extracellular	54.79	55.58
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	55.6	54.49
Bra018707.1-P	Field mustard	extracellular	51.53	53.6
Zm00001d040589_P001	Maize	extracellular	52.75	51.9
EES00620	Sorghum	extracellular	52.34	50.79
Zm00001d009057_P001	Maize	extracellular	42.57	49.41
GSMUA_Achr3P08400_001	Banana	extracellular	54.99	48.04
Bra008748.1-P	Field mustard	extracellular	37.88	42.37
Bra031724.1-P	Field mustard	extracellular	41.14	39.22
Bra003555.1-P	Field mustard	extracellular	35.03	38.48
Bra024602.1-P	Field mustard	cytosol	34.62	38.46
Bra016213.1-P	Field mustard	extracellular	36.46	38.33
Bra025216.1-P	Field mustard	extracellular	36.66	38.3
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	41.14	38.04
Bra012375.1-P	Field mustard	cytosol	34.42	37.89
Bra003286.1-P	Field mustard	extracellular	33.4	37.88
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	40.94	37.71
Bra007332.1-P	Field mustard	extracellular	32.79	37.27
Bra027148.1-P	Field mustard	extracellular	40.12	36.75
Bra025631.1-P	Field mustard	extracellular	31.57	36.73
Bra016911.1-P	Field mustard	extracellular	32.38	36.72
Bra004655.1-P	Field mustard	extracellular	31.98	36.68
Bra016345.1-P	Field mustard	extracellular	34.83	36.54
Bra029690.1-P	Field mustard	cytosol	29.94	36.21
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	31.98	35.04
Bra025103.1-P	Field mustard	extracellular	28.11	34.5
Bra025099.1-P	Field mustard	extracellular	28.11	34.5
Bra008493.1-P	Field mustard	extracellular	27.09	34.1
Bra001279.1-P	Field mustard	extracellular	29.94	33.64
Bra001605.1-P	Field mustard	extracellular	30.35	32.96
Bra027210.1-P	Field mustard	extracellular	30.55	32.89
Bra011341.1-P	Field mustard	cytosol	26.27	32.82
Bra027211.1-P	Field mustard	extracellular	30.14	32.82
Bra008572.1-P	Field mustard	extracellular	27.9	31.57
Bra023600.1-P	Field mustard	extracellular	27.29	31.31
Bra040077.1-P	Field mustard	extracellular	19.55	26.3

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra032600	EnsemblPlants:Bra032600.1	EnsemblPlants:Bra032600.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4EUW7	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF43
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI000254308E	SEG:seg	:	:	:	:

Description

AT1G02460 (E=2e-234) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA09:+:36782252..36784754

Molecular Weight (calculated)

53244.5 Da

IEP (calculated)

5.739

GRAVY (calculated)

-0.243

Length

491 amino acids

Sequence
(BLAST)

001: MLISSYTRNQ ILCFIALIIT LSSLTESRYH HHKEKHKHNS HNHHSSKPEP PSSSISQPPT PPPGPDDSPS PSLPPSPSDD PEEDDNGVYD VRKFGAVGDG
101: VADDTEAFKT AWDSSCSNGN DTVSVLLVPY GYTFMIQSTI FTGPCHSYQL FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGAG VIDGRGQKWW
201: DLPCKPHRTV NISAIVAGPC DSPIALRFFM SSNLTVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSV ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SHACVSNITV RDSVIKYSDN GVRIKTWQGG FGSVSGVTFN NIHVESVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDITYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSGIE LLPEKGEIVV DPFCWNAYGI VEELSIPPVW CLMSDPPTAL QGALVDKCGS P

Best Arabidopsis Sequence Match ( AT1G02460.1 )
(BLAST)

001: MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S

Arabidopsis Description

At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.