Factsheet for Bra031724.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 4
cytosol 1
extracellular 4
plasma membrane 3
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34877	Canola	extracellular, golgi	92.04	96.93
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	92.43	89.31
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	91.26	88.51
AT1G10640.1	Thale cress	extracellular, golgi	87.57	84.77
Bra027148.1-P	Field mustard	extracellular	79.81	76.68
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	69.32	68.92
HORVU3Hr1G031180.1	Barley	extracellular	18.84	68.79
Os05t0578600-01	Rice	cytosol, extracellular	40.58	66.99
Solyc05g005170.2.1	Tomato	nucleus	65.83	66.73
PGSC0003DMT400035162	Potato	extracellular	66.21	66.73
Os01t0637500-00	Rice	cytosol, extracellular	42.52	64.79
KRH45648	Soybean	nucleus	67.18	64.31
KRG99364	Soybean	extracellular, nucleus	66.99	64.13
GSMUA_Achr5P09080_001	Banana	extracellular	58.45	61.81
GSMUA_Achr6P22080_001	Banana	extracellular	58.06	61.65
GSMUA_Achr4P02960_001	Banana	extracellular	56.7	61.47
Bra008748.1-P	Field mustard	extracellular	50.87	59.68
HORVU3Hr1G056270.10	Barley	extracellular	59.03	57.14
TraesCS3A01G225800.2	Wheat	extracellular	59.61	56.96
GSMUA_Achr1P27280_001	Banana	extracellular	56.31	56.86
EES01142	Sorghum	extracellular	58.64	56.77
TraesCS1A01G418000.1	Wheat	extracellular	56.12	56.67
TraesCS3D01G223900.1	Wheat	extracellular	58.64	56.34
Zm00001d044110_P001	Maize	extracellular	59.03	56.09
EES20001	Sorghum	extracellular	58.45	56.05
TraesCS3B01G258600.2	Wheat	extracellular	58.25	55.87
TraesCS1B01G448100.1	Wheat	extracellular	57.48	55.85
Zm00001d011444_P002	Maize	extracellular	58.64	55.82
Os01t0636500-01	Rice	extracellular	57.86	55.39
TraesCS1D01G425600.1	Wheat	extracellular	55.92	54.65
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	53.98	53.88
HORVU1Hr1G091430.5	Barley	extracellular	57.28	53.25
Bra025216.1-P	Field mustard	extracellular	40.97	44.89
Bra018707.1-P	Field mustard	extracellular	39.22	42.8
Bra027926.1-P	Field mustard	extracellular	35.15	41.61
Bra032600.1-P	Field mustard	extracellular	39.22	41.14
Bra033328.1-P	Field mustard	extracellular	38.25	40.12
Bra000911.1-P	Field mustard	extracellular, vacuole	37.09	39.3
Bra003555.1-P	Field mustard	extracellular	32.62	37.58
Bra025631.1-P	Field mustard	extracellular	30.1	36.73
Bra029690.1-P	Field mustard	cytosol	28.93	36.7
Bra024602.1-P	Field mustard	cytosol	30.87	35.97
Bra012375.1-P	Field mustard	cytosol	30.87	35.65
Bra003286.1-P	Field mustard	extracellular	29.71	35.33
Bra016213.1-P	Field mustard	extracellular	32.04	35.33
Bra025099.1-P	Field mustard	extracellular	27.38	35.25
Bra007332.1-P	Field mustard	extracellular	29.51	35.19
Bra025103.1-P	Field mustard	extracellular	26.99	34.75
Bra016345.1-P	Field mustard	extracellular	31.46	34.62
Bra004655.1-P	Field mustard	extracellular	28.74	34.58
Bra001279.1-P	Field mustard	extracellular	28.74	33.87
Bra016911.1-P	Field mustard	extracellular	28.35	33.72
Bra008493.1-P	Field mustard	extracellular	24.85	32.82
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	28.35	32.59
Bra023600.1-P	Field mustard	extracellular	26.21	31.54
Bra001605.1-P	Field mustard	extracellular	27.18	30.97
Bra027210.1-P	Field mustard	extracellular	27.18	30.7
Bra027211.1-P	Field mustard	extracellular	26.8	30.6
Bra008572.1-P	Field mustard	extracellular	25.24	29.95
Bra011341.1-P	Field mustard	cytosol	22.72	29.77
Bra040077.1-P	Field mustard	extracellular	17.09	24.11

Protein Annotations

MapMan:50.3.2	EnsemblPlantsGene:Bra031724	EnsemblPlants:Bra031724.1	EnsemblPlants:Bra031724.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
UniProt:M4ESE6	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF58	InterPro:PbH1
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00025431AE	SEG:seg

Description

AT1G10640 (E=4e-224) | polygalacturonase

Coordinates

chrA09:+:35043426..35045969

Molecular Weight (calculated)

56712.9 Da

IEP (calculated)

8.196

GRAVY (calculated)

-0.313

Length

515 amino acids

Sequence
(BLAST)

001: MIMLMAVLVW SITLETCIAR RGRHWRHNHR SSSDLSDSLS SKKPKSHSHH HSSHNNNHNH HHKSKPKPKP KLKTPPKSDH TKSPVVSPPP KVQPPSLPPP
101: KGSKVFNVMD FGAKGDGKCD DTKAFEAAWA AACKVEASMM IIPPEYTFLV GPISFSGPYC QANIVFQLDG TIIAPTDSKS WGKGLMWWID FTKLKGIKVQ
201: GKGVIDGRGS GWWQQDYPFI DGETKLIVPL NNSVPMPIRS EFDWKMPSIK PTALRFYGSV GVEVSGITIQ NSPQCHLKFD NCVDVLVHDM AVSSPGDSPN
301: TDGIHLQNTR DVLIHSSTLA CGDDCISIQT GCSNVYIHNI NCGPGHGISI GSLGKDSTKA CVSNITVRDV AMHNTMTGVR IKTWQGGVGA VKGILFSNIQ
401: LNEVQLPIVI DQFYCDHTTC KNQTSAVAVE GVTYERIKGT YTVKPVHFAC SDDFPCVDVQ LSGIELKPVQ ERYHMYDPFC WQTFGELNSP TLPPIDCLQI
501: GKPARNRVQS DHDVC

Best Arabidopsis Sequence Match ( AT1G10640.1 )
(BLAST)

001: MIMRRSLSLR SITMMILMAV LVWSVTLETC IARRGRHWRH SHRSSSDLSD SLSNKKPKSH GNSHHHSSHN NNHHHKSKPK PKPKLKTPPK AHDNNSPVVS
101: GPPKVQPPPL PPQKGSQVFN VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKTWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV
301: GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG IIFSNIQLNQ VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS IELKPVQEKY RMYDAYCWQT
501: FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5U6]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.