Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035162 | Potato | extracellular | 97.24 | 96.67 |
| VIT_01s0127g00400.t01 | Wine grape | extracellular, mitochondrion, plastid | 72.83 | 71.43 |
| KRH45648 | Soybean | nucleus | 71.06 | 67.1 |
| KRG99364 | Soybean | extracellular, nucleus | 70.28 | 66.36 |
| GSMUA_Achr4P02960_001 | Banana | extracellular | 62.01 | 66.32 |
| Bra031724.1-P | Field mustard | extracellular | 66.73 | 65.83 |
| CDY37962 | Canola | extracellular, golgi, vacuole | 68.9 | 65.79 |
| GSMUA_Achr6P22080_001 | Banana | extracellular | 62.8 | 65.77 |
| Os05t0578600-01 | Rice | cytosol, extracellular | 40.35 | 65.71 |
| CDX93397 | Canola | extracellular, golgi, vacuole | 68.9 | 65.67 |
| Bra019912.1-P | Field mustard | extracellular, golgi, vacuole | 68.9 | 65.67 |
| CDY54228 | Canola | extracellular, golgi, vacuole | 67.13 | 64.58 |
| CDY34877 | Canola | extracellular, golgi | 61.42 | 63.8 |
| GSMUA_Achr5P09080_001 | Banana | extracellular | 61.02 | 63.66 |
| Os01t0637500-00 | Rice | cytosol, extracellular | 42.32 | 63.61 |
| Bra018429.1-P | Field mustard | extracellular, golgi, vacuole | 66.14 | 63.28 |
| HORVU3Hr1G031180.1 | Barley | extracellular | 17.52 | 63.12 |
| CDY20962 | Canola | extracellular, golgi, vacuole | 65.94 | 63.09 |
| CDY20612 | Canola | extracellular | 65.75 | 62.9 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 65.75 | 62.78 |
| CDY50367 | Canola | extracellular, golgi | 65.55 | 62.13 |
| CDY47212 | Canola | extracellular | 65.16 | 61.75 |
| AT1G60590.1 | Thale cress | extracellular | 65.55 | 61.67 |
| Bra027148.1-P | Field mustard | extracellular | 64.76 | 61.38 |
| GSMUA_Achr1P27280_001 | Banana | extracellular | 60.24 | 60.0 |
| Solyc07g015870.2.1 | Tomato | extracellular | 51.77 | 58.57 |
| TraesCS1A01G418000.1 | Wheat | extracellular | 57.09 | 56.86 |
| TraesCS3A01G225800.2 | Wheat | extracellular | 58.86 | 55.47 |
| TraesCS1B01G448100.1 | Wheat | extracellular | 57.87 | 55.47 |
| HORVU3Hr1G056270.10 | Barley | extracellular | 58.07 | 55.45 |
| TraesCS1D01G425600.1 | Wheat | extracellular | 57.28 | 55.22 |
| EES20001 | Sorghum | extracellular | 58.27 | 55.12 |
| TraesCS3B01G258600.2 | Wheat | extracellular | 58.07 | 54.93 |
| TraesCS3D01G223900.1 | Wheat | extracellular | 57.87 | 54.85 |
| EES01142 | Sorghum | extracellular | 57.09 | 54.51 |
| Os01t0636500-01 | Rice | extracellular | 57.68 | 54.46 |
| HORVU1Hr1G091430.5 | Barley | extracellular | 58.86 | 53.97 |
| Zm00001d011444_P002 | Maize | extracellular | 56.69 | 53.23 |
| Zm00001d044110_P001 | Maize | extracellular | 56.5 | 52.95 |
| Zm00001d009667_P001 | Maize | extracellular, mitochondrion, plastid | 52.36 | 51.55 |
| Solyc05g005040.2.1 | Tomato | extracellular | 42.13 | 45.44 |
| Solyc01g079130.1.1 | Tomato | extracellular | 41.14 | 44.28 |
| Solyc04g008230.2.1 | Tomato | nucleus | 40.55 | 42.04 |
| Solyc01g100980.2.1 | Tomato | extracellular | 39.37 | 42.02 |
| Solyc12g009420.1.1 | Tomato | extracellular | 31.3 | 39.07 |
| Solyc09g098270.2.1 | Tomato | cytosol | 33.07 | 38.8 |
| Solyc04g015530.1.1 | Tomato | cytosol | 29.92 | 38.78 |
| Solyc08g060970.2.1 | Tomato | nucleus | 30.12 | 38.54 |
| Solyc03g116500.2.1 | Tomato | nucleus | 34.06 | 38.27 |
| Solyc06g068040.2.1 | Tomato | nucleus | 32.87 | 38.22 |
| Solyc01g087280.1.1 | Tomato | extracellular | 30.91 | 36.94 |
| Solyc04g025440.2.1 | Tomato | extracellular | 33.27 | 36.74 |
| Solyc03g116580.2.1 | Tomato | extracellular | 30.51 | 35.47 |
| Solyc03g113230.1.1 | Tomato | extracellular | 27.95 | 34.55 |
| Solyc10g080210.1.1 | Tomato | extracellular | 29.92 | 33.26 |
Protein Annotations
| MapMan:50.3.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | UniProt:K4BW48 | PFAM:PF00295 | ScanProsite:PS00502 |
| PANTHER:PTHR31375 | PANTHER:PTHR31375:SF58 | InterPro:PbH1 | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 |
| SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc05g005170.2 | EnsemblPlants:Solyc05g005170.2.1 | UniParc:UPI0002766C38 | SEG:seg | : |
Description
No Description!
Coordinates
chr5:+:159155..162491
Molecular Weight (calculated)
55675.6 Da
IEP (calculated)
8.472
GRAVY (calculated)
-0.256
Length
508 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRLSFRSVT FMFMVTFLVW SSLNVEFCNA RRGKHWRQHG TTSSVSLYKK KGKNHGSNNH HKSGGKPKPK YASPPPISPP TKGYDNVPST NLFDVTNFGA
101: VGDGKTDDTK AFQAAWAAAC KVEDSTMIVP SKYVFLVGPI SFSGPYCQHN IVFQLDGTII APTDAKSWGS GIMQWLEFTK LVGITVKGSG VIDGRGSVWW
201: QDTPYDDPLD DELKLIIPLN KTLLRHPLTP INSSLSGKMP SIKPTALRFY GSFNVTVTGI TIQNSQQCHL KFDNCIGVLV NNFTVSSPGD SPNTDGIHLQ
301: NSKDALIRSS NIACGDDCVS IQTGCTNVYV HNINCGPGHG ISIGSLGKDN TKACVSNITV KDIIMKNTMN GVRIKTWQGG SGSVQGVFFS NIQMNEVQLP
401: IVIDQFYCDK SKCKNQTAAV ALSDINYAGI KGTYTVKPVH LACSDSMPCQ DVTMMNIQLK PIQERYHMYD PFCWQTFGEL YTPTQPPIEC LQVGKPTSNK
501: IQADHDQC
101: VGDGKTDDTK AFQAAWAAAC KVEDSTMIVP SKYVFLVGPI SFSGPYCQHN IVFQLDGTII APTDAKSWGS GIMQWLEFTK LVGITVKGSG VIDGRGSVWW
201: QDTPYDDPLD DELKLIIPLN KTLLRHPLTP INSSLSGKMP SIKPTALRFY GSFNVTVTGI TIQNSQQCHL KFDNCIGVLV NNFTVSSPGD SPNTDGIHLQ
301: NSKDALIRSS NIACGDDCVS IQTGCTNVYV HNINCGPGHG ISIGSLGKDN TKACVSNITV KDIIMKNTMN GVRIKTWQGG SGSVQGVFFS NIQMNEVQLP
401: IVIDQFYCDK SKCKNQTAAV ALSDINYAGI KGTYTVKPVH LACSDSMPCQ DVTMMNIQLK PIQERYHMYD PFCWQTFGEL YTPTQPPIEC LQVGKPTSNK
501: IQADHDQC
001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.