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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:
  • nucleus 1
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 4
  • plasma membrane 3
  • golgi 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi, vacuole
Any Predictor:mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:vacuole
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX93397 Canola extracellular, golgi, vacuole 98.87 98.69
CDY34877 Canola extracellular, golgi 84.59 92.02
CDY54228 Canola extracellular, golgi, vacuole 90.41 91.1
CDY20612 Canola extracellular 90.6 90.77
CDY20962 Canola extracellular, golgi, vacuole 90.23 90.4
AT1G10640.1 Thale cress extracellular, golgi 88.72 88.72
CDY47212 Canola extracellular 78.57 77.99
CDY50367 Canola extracellular, golgi 78.38 77.8
VIT_01s0127g00400.t01 Wine grape extracellular, mitochondrion, plastid 69.55 71.43
Solyc05g005170.2.1 Tomato nucleus 65.79 68.9
PGSC0003DMT400035162 Potato extracellular 65.98 68.69
HORVU3Hr1G031180.1 Barley extracellular 18.05 68.09
Os05t0578600-01 Rice cytosol, extracellular 38.91 66.35
KRG99364 Soybean extracellular, nucleus 66.92 66.17
KRH45648 Soybean nucleus 66.54 65.8
Os01t0637500-00 Rice cytosol, extracellular 41.35 65.09
GSMUA_Achr6P22080_001 Banana extracellular 58.27 63.92
GSMUA_Achr5P09080_001 Banana extracellular 58.27 63.66
GSMUA_Achr4P02960_001 Banana extracellular 56.39 63.16
CDX69569 Canola extracellular 50.38 61.05
CDY09873 Canola extracellular 50.38 61.05
GSMUA_Achr1P27280_001 Banana extracellular 56.02 58.43
TraesCS1A01G418000.1 Wheat extracellular 55.83 58.24
HORVU3Hr1G056270.10 Barley extracellular 58.08 58.08
TraesCS3A01G225800.2 Wheat extracellular 58.83 58.07
EES01142 Sorghum extracellular 57.71 57.71
TraesCS3D01G223900.1 Wheat extracellular 57.89 57.46
TraesCS1B01G448100.1 Wheat extracellular 57.14 57.36
EES20001 Sorghum extracellular 57.52 56.98
TraesCS3B01G258600.2 Wheat extracellular 57.52 56.98
Zm00001d011444_P002 Maize extracellular 57.89 56.93
Zm00001d044110_P001 Maize extracellular 57.71 56.64
Os01t0636500-01 Rice extracellular 57.14 56.51
TraesCS1D01G425600.1 Wheat extracellular 55.83 56.36
HORVU1Hr1G091430.5 Barley extracellular 56.95 54.69
Zm00001d009667_P001 Maize extracellular, mitochondrion, plastid 53.01 54.65
CDY13645 Canola extracellular 39.85 45.11
CDY67535 Canola extracellular 26.32 45.02
CDX83631 Canola extracellular 39.29 44.37
CDY43307 Canola extracellular 38.53 43.34
CDX93644 Canola extracellular 38.16 43.01
CDX95284 Canola extracellular 31.58 41.58
CDY41695 Canola extracellular 33.83 41.38
CDX77909 Canola extracellular 37.22 40.33
CDY15246 Canola extracellular 37.03 40.12
CDX89966 Canola extracellular 37.03 40.12
CDY57689 Canola extracellular 31.58 37.58
CDY54312 Canola extracellular 31.2 37.39
CDY04708 Canola plastid 19.36 37.18
CDY50769 Canola extracellular 23.87 37.13
CDY56952 Canola extracellular 28.95 36.58
CDY39399 Canola extracellular 27.44 36.5
CDY38648 Canola cytosol 25.56 36.36
CDY39404 Canola extracellular 27.26 36.34
CDX74418 Canola extracellular 28.76 36.26
CDY69377 Canola extracellular 27.26 36.25
CDY54292 Canola cytosol 30.26 36.1
CDY25786 Canola cytosol 30.26 36.1
CDY37571 Canola cytosol 25.38 36.1
CDX73440 Canola extracellular 27.07 36.0
CDY11585 Canola extracellular 31.39 35.76
CDY47139 Canola extracellular 31.39 35.76
CDY47032 Canola extracellular 27.07 35.73
CDY71357 Canola extracellular, vacuole 21.24 35.65
CDY48768 Canola extracellular 29.14 35.63
CDX72553 Canola extracellular 26.88 35.48
CDX79907 Canola extracellular 28.95 35.4
CDX67693 Canola extracellular 28.38 34.87
CDX72025 Canola extracellular 28.2 34.72
CDY35976 Canola extracellular 27.07 34.2
CDY14791 Canola extracellular 27.82 34.18
CDY07963 Canola extracellular 28.01 34.02
CDY28005 Canola extracellular 26.88 33.97
CDY06902 Canola extracellular 27.44 33.72
CDX74019 Canola extracellular 27.63 33.64
CDX85471 Canola extracellular 25.38 33.25
CDY44150 Canola extracellular, golgi, plastid 30.45 32.27
CDY02729 Canola extracellular 25.75 32.01
CDX75843 Canola extracellular 26.32 30.91
CDY58462 Canola extracellular 25.94 30.46
CDY16952 Canola extracellular 24.62 30.18
CDX97703 Canola extracellular 25.56 30.09
CDY30105 Canola extracellular 25.38 30.07
CDX97704 Canola extracellular 25.56 29.82
CDY41445 Canola endoplasmic reticulum 31.02 29.68
CDY30107 Canola extracellular 25.38 29.61
CDX68839 Canola cytosol 22.37 29.31
CDX75239 Canola cytosol 22.18 29.06
CDX69397 Canola extracellular 21.62 28.47
CDY39884 Canola extracellular 22.93 27.42
CDY61868 Canola extracellular 27.82 26.96
CDY06100 Canola extracellular 18.8 23.42
Protein Annotations
MapMan:50.3.2GO:A0A078HJB5UniProt:A0A078HJB5EnsemblPlants:CDY37962ProteinID:CDY37962ProteinID:CDY37962.1
GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005575GO:GO:0005576GO:GO:0005975
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0016798
GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00064997001InterPro:Glyco_hydro_28PFAM:PF00295ScanProsite:PS00502PANTHER:PTHR31375
PANTHER:PTHR31375:SF58InterPro:PbH1InterPro:Pectin_lyase_fold/virulenceSMART:SM00710SUPFAM:SSF51126SignalP:SignalP-noTM
TMHMM:TMhelixUniParc:UPI0004EF3279SEG:seg:::
Description
BnaC05g08120DBnaC05g08120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJB5]
Coordinates
chrLK032413:+:57058..60014
Molecular Weight (calculated)
58494.1 Da
IEP (calculated)
8.449
GRAVY (calculated)
-0.365
Length
532 amino acids
Sequence
(BLAST)
001: MMRKGLRLRS ITMMMLMAVL VWSVTLETCI ARRGKHWRHN HRSSSDLSDS LSSKKPKSHG NSHHNSHNNN NNHHQKSKPK PKPKQKTPPK ADGNNSPVIS
101: PPPKVQPPSL PPLKGSQVFN VMDFGAKGDG KCDDTKAFEA AWAAACKVEA SMMTVPPEYT FLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKSWGKGLMW
201: WIEFTKLKGI KVQGKGVIDG RGSGWWQQDY PFIDGETKLI VPLNNSVHQN PPMPVRSELD WKMPSIKPTA LRFYGSIGVE VSGITIQNSP QCHLKFDNCI
301: DVEVHDMSVS SPGDSPNTDG IHLQNSRDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKDSTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG ILFSNIQLNE VQLPIVIDQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSA IELKPVQEKY HMSDPFCWQT
501: FGELNTPTLP PIDCLQIGKP ARNRVQSDHD VC
Best Arabidopsis Sequence Match ( AT1G10640.1 )
(BLAST)
001: MIMRRSLSLR SITMMILMAV LVWSVTLETC IARRGRHWRH SHRSSSDLSD SLSNKKPKSH GNSHHHSSHN NNHHHKSKPK PKPKLKTPPK AHDNNSPVVS
101: GPPKVQPPPL PPQKGSQVFN VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKTWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV
301: GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG IIFSNIQLNQ VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS IELKPVQEKY RMYDAYCWQT
501: FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5U6]
SUBAcon: [golgi,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.