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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytoskeleton, cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY38648 Canola cytosol 98.4 98.4
Bra008493.1-P Field mustard extracellular 97.06 93.08
AT1G80140.1 Thale cress extracellular 73.26 81.55
Solyc12g009420.1.1 Tomato extracellular 43.05 39.56
CDY30105 Canola extracellular 41.18 34.3
CDY50769 Canola extracellular 31.28 34.21
CDX97703 Canola extracellular 40.91 33.85
CDX75843 Canola extracellular 40.91 33.77
CDY58462 Canola extracellular 40.91 33.77
CDX72025 Canola extracellular 38.5 33.33
CDY56952 Canola extracellular 37.43 33.25
CDX72553 Canola extracellular 35.83 33.25
CDY47032 Canola extracellular 35.83 33.25
CDX74418 Canola extracellular 37.43 33.18
CDY30107 Canola extracellular 40.37 33.11
CDX67693 Canola extracellular 38.24 33.03
CDY69377 Canola extracellular 35.29 33.0
CDX97704 Canola extracellular 40.11 32.89
CDY28005 Canola extracellular 36.9 32.78
CDY35976 Canola extracellular 36.9 32.78
CDX85471 Canola extracellular 35.29 32.51
CDY04708 Canola plastid 24.06 32.49
CDY39404 Canola extracellular 34.49 32.33
CDX73440 Canola extracellular 34.49 32.25
CDY41695 Canola extracellular 37.17 31.95
CDY16952 Canola extracellular 36.9 31.8
CDY02729 Canola extracellular 36.1 31.54
CDY54312 Canola extracellular 37.43 31.53
CDY07963 Canola extracellular 36.9 31.51
CDY39399 Canola extracellular 33.69 31.5
CDY67535 Canola extracellular 25.94 31.19
CDX95284 Canola extracellular 33.69 31.19
CDY25786 Canola cytosol 36.9 30.94
CDX69397 Canola extracellular 33.42 30.94
Zm00001d039668_P001 Maize plastid 36.1 30.89
CDX74019 Canola extracellular 36.1 30.89
CDY57689 Canola extracellular 36.9 30.87
CDX79907 Canola extracellular 35.83 30.8
CDY54292 Canola cytosol 36.63 30.72
CDY11585 Canola extracellular 38.24 30.62
CDY47139 Canola extracellular 38.24 30.62
CDY14791 Canola extracellular 35.29 30.48
CDY48768 Canola extracellular 35.29 30.34
CDX68839 Canola cytosol 32.89 30.3
CDX75239 Canola cytosol 32.89 30.3
CDY06902 Canola extracellular 35.03 30.25
CDY13645 Canola extracellular 37.7 30.0
CDX83631 Canola extracellular 37.7 29.94
CDX69569 Canola extracellular 34.49 29.39
CDY09873 Canola extracellular 34.49 29.39
CDY71357 Canola extracellular, vacuole 24.33 28.71
CDX93644 Canola extracellular 36.1 28.6
CDY43307 Canola extracellular 36.1 28.54
CDY39884 Canola extracellular 33.69 28.31
CDY15246 Canola extracellular 36.9 28.11
CDX77909 Canola extracellular 36.9 28.11
CDX89966 Canola extracellular 36.63 27.9
CDY44150 Canola extracellular, golgi, plastid 36.63 27.29
CDY61868 Canola extracellular 37.97 25.87
CDX93397 Canola extracellular, golgi, vacuole 36.36 25.52
CDY54228 Canola extracellular, golgi, vacuole 35.83 25.38
CDY37962 Canola extracellular, golgi, vacuole 36.1 25.38
CDY50367 Canola extracellular, golgi 36.1 25.19
CDY47212 Canola extracellular 36.1 25.19
Os01t0172900-00 Rice nucleus 19.52 24.75
CDY20612 Canola extracellular 34.76 24.48
CDY20962 Canola extracellular, golgi, vacuole 34.76 24.48
CDY41445 Canola endoplasmic reticulum 36.1 24.28
CDY34877 Canola extracellular, golgi 31.02 23.72
CDY06100 Canola extracellular 27.01 23.65
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078HIS6UniProt:A0A078HIS6EnsemblPlants:CDY37571ProteinID:CDY37571
ProteinID:CDY37571.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005575GO:GO:0005576
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016043GO:GO:0016787
GO:GO:0016798GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00064200001InterPro:Glyco_hydro_28InterPro:IPR012334PFAM:PF00295
PANTHER:PTHR31375PANTHER:PTHR31375:SF97InterPro:PbH1InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00710
SUPFAM:SSF51126UniParc:UPI0004EF1708::::
Description
BnaA02g19990DBnaA02g19990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HIS6]
Coordinates
chrLK032403:+:123825..125551
Molecular Weight (calculated)
40381.2 Da
IEP (calculated)
7.832
GRAVY (calculated)
-0.167
Length
374 amino acids
Sequence
(BLAST)
001: MKYGAVGDGI SDDTSALQKA WDSACNGSSK IGSVYVPAGK VFLLKSLHFT GPCKLKPLIF TIDGEMKAQS DPNKWQKGEN GIIPWLIFER VEGLVLSGRG
101: LLDGQGKGWW DIHCRDHPGP NCIWLAPTMM TFSNCRNVIL KSLRFRNSAQ SHILVMGSQN VHIKDVKIKS PEISPNTDGV HITSSSDVSI THSDFATGDD
201: CVSIGDQVHN LSVTFVNCGP GHGVSVGSLG RGGTEVEVED IRVAHVNFTG TTNGARIKTW PGGTGYVRGI EFFDIRFSNV QNPIIIDQFY GCAPNCVQTE
301: KAVHIEKVKY MKMSGTSRTE VAMKLECSGK NACSNVFMRD IDLSPANGIG SVSSTCSFVQ GSTQGTIRPS SCIQ
Best Arabidopsis Sequence Match ( AT1G80140.1 )
(BLAST)
001: MGSVNVPAGK VFLLNSLHFT GPCIPKPLLF IIDGEMIAQS DPQKWGNGEN GVIPWLIFDQ VDGLAIVGRG LLDGQGKSWW DIHCRDHPGP MMTFSNCGNV
101: TLKSLRFRNS AQTHVLVMGS QNVYIDDIKI TSPEASPNTD GIHITSSTAV SINHSDIATG DDCVSIGDQV NNLNVTFMNC GPGHGVSIGS LGRGGTEVTV
201: ENIRVSHVNF TGTTNGARIK TWPGGTGYVR GIEFFDIRFS SVQNPIIIDQ FYGCAPTCVE TMKGVHIEKV RYMKMSGTSA TKVAMKLECS GESVPCSNLF
301: MRDIDLSPAD GIDSVSSLCS FAHGSAQGII RPLSCF
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HS31]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.