Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 3
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, extracellular, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:extracellular
PProwler:plastid
TargetP:plastid
WoLF PSORT:endoplasmic reticulum
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY25786 Canola cytosol 92.78 57.62
CDY54292 Canola cytosol 92.42 57.4
AT1G23460.1 Thale cress extracellular 90.61 54.57
CDY44150 Canola extracellular, golgi, plastid 98.56 54.38
CDY41445 Canola endoplasmic reticulum 94.22 46.94
CDY11585 Canola extracellular 77.62 46.04
CDY47139 Canola extracellular 77.62 46.04
Solyc09g098270.2.1 Tomato cytosol 69.68 44.57
Solyc04g025440.2.1 Tomato extracellular 71.48 43.04
PGSC0003DMT400080722 Potato extracellular 71.48 43.04
PGSC0003DMT400055713 Potato extracellular 69.68 42.14
GSMUA_Achr7P01870_001 Banana cytosol 64.98 40.91
GSMUA_Achr4P22100_001 Banana extracellular 63.54 37.93
CDY67535 Canola extracellular 37.91 33.76
EES04449 Sorghum extracellular 54.15 28.85
TraesCS6B01G118000.2 Wheat extracellular, golgi, vacuole 53.43 28.03
TraesCSU01G113500.1 Wheat extracellular, golgi, vacuole 53.07 27.84
TraesCS6A01G084500.1 Wheat extracellular, golgi, vacuole 52.71 27.81
Zm00001d015129_P001 Maize mitochondrion 51.26 27.52
HORVU6Hr1G015390.2 Barley extracellular, golgi 52.35 27.46
CDY48768 Canola extracellular 42.96 27.36
CDY14791 Canola extracellular 42.24 27.02
Os02t0130200-01 Rice extracellular, golgi 49.46 26.97
CDY06902 Canola extracellular 41.88 26.79
CDY57689 Canola extracellular 42.96 26.62
CDY54312 Canola extracellular 42.6 26.58
CDX79907 Canola extracellular 41.52 26.44
CDX95284 Canola extracellular 38.27 26.24
CDX67693 Canola extracellular 40.43 25.87
CDX72025 Canola extracellular 40.07 25.69
CDY50769 Canola extracellular 31.41 25.44
CDX74019 Canola extracellular 40.07 25.4
CDY07963 Canola extracellular 40.07 25.34
CDX69569 Canola extracellular 39.71 25.06
CDY09873 Canola extracellular 39.71 25.06
CDY28005 Canola extracellular 37.91 24.94
CDY35976 Canola extracellular 37.91 24.94
CDY41695 Canola extracellular 38.99 24.83
CDY38648 Canola cytosol 32.49 24.06
CDY37571 Canola cytosol 32.49 24.06
CDX72553 Canola extracellular 34.66 23.82
CDY47032 Canola extracellular 34.66 23.82
CDY56952 Canola extracellular 36.1 23.75
CDX74418 Canola extracellular 36.1 23.7
CDY69377 Canola extracellular 33.21 23.0
CDY58462 Canola extracellular 37.55 22.96
CDY39404 Canola extracellular 32.85 22.81
CDX75843 Canola extracellular 37.18 22.74
CDY13645 Canola extracellular 37.91 22.34
CDX83631 Canola extracellular 37.91 22.29
CDX69397 Canola extracellular 32.13 22.03
CDY39399 Canola extracellular 31.77 22.0
CDX97704 Canola extracellular 36.1 21.93
CDY30107 Canola extracellular 36.1 21.93
KRG99363 Soybean extracellular 69.31 21.79
CDY15246 Canola extracellular 38.63 21.79
CDX97703 Canola extracellular 35.38 21.68
CDX68839 Canola cytosol 31.77 21.67
CDX75239 Canola cytosol 31.77 21.67
CDX85471 Canola extracellular 31.77 21.67
CDY30105 Canola extracellular 35.02 21.6
CDX89966 Canola extracellular 38.27 21.59
CDX73440 Canola extracellular 31.05 21.5
CDX77909 Canola extracellular 37.91 21.38
CDX93644 Canola extracellular 35.74 20.97
CDY43307 Canola extracellular 35.74 20.93
CDY02729 Canola extracellular 32.13 20.79
CDY16952 Canola extracellular 32.49 20.74
CDY54228 Canola extracellular, golgi, vacuole 37.18 19.51
CDY20962 Canola extracellular, golgi, vacuole 37.18 19.4
CDY20612 Canola extracellular 37.18 19.4
CDY37962 Canola extracellular, golgi, vacuole 37.18 19.36
CDX93397 Canola extracellular, golgi, vacuole 37.18 19.32
CDY47212 Canola extracellular 37.18 19.22
CDY50367 Canola extracellular, golgi 37.18 19.22
CDY61868 Canola extracellular 37.55 18.94
CDY39884 Canola extracellular 29.6 18.43
CDY34877 Canola extracellular, golgi 31.41 17.79
CDY06100 Canola extracellular 21.3 13.82
CDY71357 Canola extracellular, vacuole 15.16 13.25
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078EYJ2EnsemblPlants:CDY04708ProteinID:CDY04708ProteinID:CDY04708.1
GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00119341001InterPro:Glyco_hydro_28InterPro:IPR012334PFAM:PF00295ScanProsite:PS00502
PANTHER:PTHR31375PANTHER:PTHR31375:SF29InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSUPFAM:SSF51126UniParc:UPI0004EC80FD
Description
BnaC05g18810D
Coordinates
chrLK031957:-:34541..35858
Molecular Weight (calculated)
29621.8 Da
IEP (calculated)
5.265
GRAVY (calculated)
-0.225
Length
277 amino acids
Sequence
(BLAST)
001: MQALTIDSSS GVKVSGLTIQ NSQQMNFIIA RSDSVRVSKV MVSSPGDSPN TDGIHITGST NVVLQDCKIG TGDDCVSIVN ASSNIKMKRI YCGPGHGISI
101: GSLGNNNSTG IVTKVVLDTA LLRETTNGLR IKTYQGGSGY VQDVRFTNVE MQDVSNPILI DQFYCDNPTS CQNQTSAVKI SQIMYRNITG TTKSEKAIKF
201: ACSDTVPCSH IVLNNVNLEG KDGQVEAYCN SAEGFGYGVI HPSADCLYSH DDKGFDHSHT SGPVLVTEEA EIGHDEL
Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)
001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.