Factsheet for Solyc09g098270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055713	Potato	extracellular	95.61	90.39
CDY04708	Canola	plastid	44.57	69.68
Solyc04g025440.2.1	Tomato	extracellular	71.13	66.96
CDY25786	Canola	cytosol	68.36	66.37
Bra012375.1-P	Field mustard	cytosol	68.13	66.14
CDY54292	Canola	cytosol	68.13	66.14
Bra024602.1-P	Field mustard	cytosol	67.44	66.06
Bra016345.1-P	Field mustard	extracellular	69.52	64.32
AT1G23460.1	Thale cress	extracellular	67.44	63.48
Bra016213.1-P	Field mustard	extracellular	66.05	61.24
CDY11585	Canola	extracellular	66.05	61.24
CDY47139	Canola	extracellular	66.05	61.24
GSMUA_Achr7P01870_001	Banana	cytosol	60.28	59.32
AT1G70500.1	Thale cress	extracellular	63.51	58.76
CDY44150	Canola	extracellular, golgi, plastid	67.9	58.57
GSMUA_Achr4P22100_001	Banana	extracellular	59.35	55.39
CDY41445	Canola	endoplasmic reticulum	69.52	54.14
Zm00001d015129_P001	Maize	mitochondrion	52.19	43.8
EES04449	Sorghum	extracellular	52.19	43.46
Solyc06g068040.2.1	Tomato	nucleus	43.65	43.25
Solyc04g015530.1.1	Tomato	cytosol	39.03	43.11
Os02t0130200-01	Rice	extracellular, golgi	49.42	42.13
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	50.12	41.33
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	50.35	41.29
TraesCSU01G113500.1	Wheat	extracellular, golgi, vacuole	50.12	41.1
HORVU6Hr1G015390.2	Barley	extracellular, golgi	49.65	40.72
Solyc03g116500.2.1	Tomato	nucleus	41.57	39.82
Solyc12g009420.1.1	Tomato	extracellular	36.26	38.57
Solyc01g087280.1.1	Tomato	extracellular	37.41	38.12
Solyc07g015870.2.1	Tomato	extracellular	38.34	36.97
Solyc08g060970.2.1	Tomato	nucleus	33.26	36.27
Solyc03g113230.1.1	Tomato	extracellular	34.18	36.01
Solyc10g080210.1.1	Tomato	extracellular	36.95	35.01
Solyc01g100980.2.1	Tomato	extracellular	37.88	34.45
Solyc01g079130.1.1	Tomato	extracellular	36.95	33.9
Solyc03g116580.2.1	Tomato	extracellular	34.18	33.87
Solyc05g005170.2.1	Tomato	nucleus	38.8	33.07
KRG99363	Soybean	extracellular	66.05	32.46
Solyc04g008230.2.1	Tomato	nucleus	36.49	32.24
Solyc05g005040.2.1	Tomato	extracellular	34.41	31.63

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334
UniProt:K4CWZ7	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF29	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	EnsemblPlantsGene:Solyc09g098270.2	EnsemblPlants:Solyc09g098270.2.1	UniParc:UPI000276C16C	SEG:seg

Description

No Description!

Coordinates

chr9:+:72148944..72152107

Molecular Weight (calculated)

47298.4 Da

IEP (calculated)

4.725

GRAVY (calculated)

-0.377

Length

433 amino acids

Sequence
(BLAST)

001: MDDGEKINIL EENFCSDFDD IIYNEDEDEI FDVWRNGEGN KNLVNVDTCG AIGDGTSDDT KAFEDAWKEA CSKRRSVFMV PSGRTYLVNA TKFNGPCANG
101: LIIQIDGTIV APSDPENWDP KSSKAWLVFS NLTGVTFQGN GIIDGSGSKW WEASCKKNKS NPCKSAPRAL TIDLSSVIRV KGLTFQNSQQ MHFVISRSNS
201: VRVNGVMVSS PEDSPNTDGI HITESTNVVL QDCKIGTGDD CISIVNASSN IKMKKIYCGP GHGISIGSLG KDDSIGVVNR VVLDTAFLKG TTNGLRIKTW
301: QGGSGYVRTV RFQNVQMEDV SNPIIIDQFY CDSQKPCQNQ TSAVEISEVL YRNVSGTTKS KKAMKFACSD TVPCSHITLD NVNLEARDGT AEVYCNSATG
401: IIAGYVHPEA ECLNSNDKKI EQKIEECNVH DEL

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.