CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015129_P001	Maize	mitochondrion	84.04	84.69
Os02t0130200-01	Rice	extracellular, golgi	68.08	69.69
HORVU6Hr1G015390.2	Barley	extracellular, golgi	61.92	60.98
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	60.96	60.38
TraesCSU01G113500.1	Wheat	extracellular, golgi, vacuole	61.15	60.23
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	60.96	60.04
GSMUA_Achr7P01870_001	Banana	cytosol	47.12	55.68
AT1G23460.1	Thale cress	extracellular	48.27	54.57
Bra012375.1-P	Field mustard	cytosol	46.73	54.48
CDY04708	Canola	plastid	28.85	54.15
Bra024602.1-P	Field mustard	cytosol	45.96	54.07
CDY25786	Canola	cytosol	46.35	54.04
CDY54292	Canola	cytosol	46.15	53.81
CDY11585	Canola	extracellular	48.08	53.53
CDY47139	Canola	extracellular	48.08	53.53
Bra016213.1-P	Field mustard	extracellular	48.08	53.53
GSMUA_Achr4P22100_001	Banana	extracellular	47.31	53.02
AT1G70500.1	Thale cress	extracellular	47.69	52.99
Solyc09g098270.2.1	Tomato	cytosol	43.46	52.19
Bra016345.1-P	Field mustard	extracellular	46.15	51.28
PGSC0003DMT400080722	Potato	extracellular	44.62	50.43
PGSC0003DMT400055713	Potato	extracellular	44.23	50.22
Solyc04g025440.2.1	Tomato	extracellular	44.23	50.0
CDY44150	Canola	extracellular, golgi, plastid	47.5	49.2
EES18597	Sorghum	extracellular	34.62	44.12
CDY41445	Canola	endoplasmic reticulum	46.35	43.35
KXG39856	Sorghum	extracellular	34.04	41.16
KXG26899	Sorghum	extracellular	31.54	39.05
EER90686	Sorghum	plastid	32.12	38.3
EER93240	Sorghum	extracellular	32.5	37.39
EER90681	Sorghum	extracellular	33.46	37.26
KXG32718	Sorghum	extracellular	29.62	35.32
EES00620	Sorghum	extracellular	34.04	34.98
KXG31745	Sorghum	extracellular	28.27	34.11
KXG22449	Sorghum	extracellular, golgi	30.58	33.97
EES01142	Sorghum	extracellular	32.88	32.14
KXG32428	Sorghum	mitochondrion	31.92	31.92
EES20001	Sorghum	extracellular	32.31	31.28
KRG99363	Soybean	extracellular	46.73	27.58
KXG32426	Sorghum	extracellular	33.27	25.0

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EntrezGene:8057507	EntrezGene:8069918	UniProt:C5XTT5	EnsemblPlants:EES04449
ProteinID:EES04449	ProteinID:EES04449.2	ProteinID:EES06226.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016788	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF29	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	EnsemblPlantsGene:SORBI_3004G028700	SUPFAM:SSF51126	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0001A85F86	RefSeq:XP_002451473.1	RefSeq:XP_002453250.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:2279703..2284345

Molecular Weight (calculated)

55090.1 Da

IEP (calculated)

4.570

GRAVY (calculated)

-0.343

Length

520 amino acids

Sequence
(BLAST)

001: MGAAARRCVL LLALLMLVAA ARTAAVGDGD GGGGGNGGGE ATEEDQVLRL WSSSLAAASG EEADDEDRFS NWEWDDDDDD EEDKEEDDHV MAVMQGKGAC
101: RNVVNVESFG AAGDGDADDT QAFASAWKTA CSLDNPVFLV PAGRRYKVGA IQFLGPCKDN RMIIQIQGTI VAPEEPSEWD PQSPRLWLLF SGLAGARIQG
201: GGVIDGSGSK WWANSCKINK SNPCRGAPTA VTIDSCRGVR VRGLRVRNAQ QMHVTVSRSR GVRVGGLRID APEDSPNTDG IHVADSTAVT IQSCRIGTGD
301: DCISIVNGSF GVKMRNIDCG PGHGISIGSL GKGGAFAAVA DVALDGARIR RAQNGVRIKT WQGGAGYVRG VRFANVDMDG VDHPIVIDQF YCDVPPGGGD
401: RSRTCANQTS AVAVSDVSYR NITGTSRRAE AIRFACSDAV PCTGIVLRDI NLRRDDDDGE VQTVCNCAVG FDYGRVRPAA DCLRSSTCGG APDDHHGDEE
501: EEEEEQGKRK DEAVVLHTEL

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.