CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038874_P002	Maize	extracellular	90.93	90.05
TraesCS1B01G382200.2	Wheat	extracellular	80.88	79.71
TraesCS1A01G364800.2	Wheat	extracellular	80.15	78.99
TraesCS1D01G370300.3	Wheat	extracellular	79.17	78.59
Os05t0542800-02	Rice	extracellular	75.74	72.54
KXG22449	Sorghum	extracellular, golgi	52.7	45.94
KRH09752	Soybean	extracellular	47.55	42.36
CDY54312	Canola	extracellular	45.83	42.12
VIT_09s0002g06380.t01	Wine grape	cytosol	42.65	42.03
GSMUA_Achr3P13670_001	Banana	extracellular	46.81	41.98
Bra003555.1-P	Field mustard	extracellular	45.83	41.83
CDY57689	Canola	extracellular	45.59	41.61
Solyc06g068040.2.1	Tomato	nucleus	44.36	41.42
AT1G80170.1	Thale cress	extracellular	44.85	41.22
Solyc03g116500.2.1	Tomato	nucleus	45.34	40.93
PGSC0003DMT400001638	Potato	extracellular, plastid	44.61	40.53
EER90686	Sorghum	plastid	40.44	37.84
EER93240	Sorghum	extracellular	41.18	37.17
KXG39856	Sorghum	extracellular	38.73	36.74
EES04449	Sorghum	extracellular	44.12	34.62
EER90681	Sorghum	extracellular	39.46	34.48
KXG26899	Sorghum	extracellular	34.8	33.81
KXG32718	Sorghum	extracellular	34.56	32.34
EES00620	Sorghum	extracellular	39.46	31.82
KXG31745	Sorghum	extracellular	31.62	29.93
KXG32428	Sorghum	mitochondrion	37.99	29.81
EES20001	Sorghum	extracellular	37.5	28.49
EES01142	Sorghum	extracellular	36.76	28.2
KXG32426	Sorghum	extracellular	38.97	22.98

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EntrezGene:8061087	UniProt:C5YUW4	EnsemblPlants:EES18597	ProteinID:EES18597
ProteinID:EES18597.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295	ScanProsite:PS00502
PANTHER:PTHR31375	PANTHER:PTHR31375:SF4	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
EnsemblPlantsGene:SORBI_3009G216100	SUPFAM:SSF51126	unigene:Sbi.15856	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001A88CE0
RefSeq:XP_002440167.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:56072231..56075194

Molecular Weight (calculated)

43249.9 Da

IEP (calculated)

7.657

GRAVY (calculated)

0.012

Length

408 amino acids

Sequence
(BLAST)

001: MAVRLPLALA AVAAVLLLLL CRGGGAEARV LLTLDDFGGV GDGIANDTQA LLDAWTAACT SSEEAVLAVP AGKAYRIWPV QLSGPCKKKL KLLISGAIVA
101: PSSPDEWAGR DPMKWLYIYG VDGLSVSGGG TIDGMGQQWW ASTCKRKKTQ PCYSGPRPKA VHFEECRGVS VQGVTLQNAQ QFQLTFTRCS CVKASFLRVI
201: APADSPNTDG IHLNDTSHVH ITDNLISTGD DCVSMVGNCS DVHVKDISCG PGHGISIGSL GKNRTTDMVE NVRVDTCLLT NTTNGVRIKS WQGGMGFARD
301: LRFENILMKN VSNPIIVDQY YCDQPTPCAN QTQAVEVRKV EFANIRGTSA TAQAISIACS DTVPCRELEL ANVNLTLAEG GGRATALCYR ASGKSVGTVV
401: PPSCLAKS

Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)

001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL

Arabidopsis Description

Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.