Factsheet for Solyc06g068040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g116500.2.1	Tomato	nucleus	62.7	60.62
VIT_09s0002g06380.t01	Wine grape	cytosol	53.55	56.52
AT1G80170.1	Thale cress	extracellular	52.17	51.35
CDY54312	Canola	extracellular	51.49	50.68
CDY57689	Canola	extracellular	51.72	50.56
GSMUA_Achr3P13670_001	Banana	extracellular	52.4	50.33
KRH09752	Soybean	extracellular	52.4	50.0
Bra003555.1-P	Field mustard	extracellular	51.03	49.89
EES18597	Sorghum	extracellular	41.42	44.36
TraesCS1D01G370300.3	Wheat	extracellular	41.42	44.04
Zm00001d038874_P002	Maize	extracellular	41.42	43.93
Solyc04g015530.1.1	Tomato	cytosol	39.36	43.88
Solyc09g098270.2.1	Tomato	cytosol	43.25	43.65
TraesCS1B01G382200.2	Wheat	extracellular	41.19	43.48
Os05t0542800-02	Rice	extracellular	42.33	43.43
TraesCS1A01G364800.2	Wheat	extracellular	40.73	43.0
Solyc08g060970.2.1	Tomato	nucleus	38.22	42.07
Solyc04g025440.2.1	Tomato	extracellular	43.25	41.09
Solyc12g009420.1.1	Tomato	extracellular	37.07	39.8
Solyc01g087280.1.1	Tomato	extracellular	38.44	39.53
Solyc10g080210.1.1	Tomato	extracellular	40.73	38.95
TraesCS1D01G370700.1	Wheat	extracellular	36.61	38.19
TraesCS1B01G382700.1	Wheat	extracellular	36.61	38.19
HORVU1Hr1G079130.2	Barley	extracellular	36.61	36.87
TraesCS3B01G020300.1	Wheat	extracellular	37.3	36.79
TraesCS3A01G024500.1	Wheat	extracellular	37.07	36.65
TraesCS3D01G021700.1	Wheat	extracellular	36.84	36.51
TraesCS1D01G370800.1	Wheat	extracellular	35.93	36.18
TraesCS1B01G382800.1	Wheat	extracellular	35.93	36.18
TraesCS1A01G365300.1	Wheat	extracellular	35.93	36.09
Os05t0542900-01	Rice	extracellular	36.61	35.96
Solyc07g015870.2.1	Tomato	extracellular	36.84	35.86
HORVU3Hr1G006180.2	Barley	extracellular	35.24	35.81
Solyc01g079130.1.1	Tomato	extracellular	38.22	35.38
Solyc03g113230.1.1	Tomato	extracellular	33.18	35.28
TraesCS1A01G365200.1	Wheat	extracellular	36.61	34.86
Zm00001d038875_P001	Maize	extracellular	37.3	34.61
Solyc03g116580.2.1	Tomato	extracellular	34.32	34.32
Solyc01g100980.2.1	Tomato	extracellular	37.3	34.24
KXG22449	Sorghum	extracellular, golgi	36.61	34.19
HORVU1Hr1G079140.6	Barley	plastid	37.76	33.74
Solyc05g005170.2.1	Tomato	nucleus	38.22	32.87
Solyc04g008230.2.1	Tomato	nucleus	36.16	32.24
Solyc05g005040.2.1	Tomato	extracellular	34.55	32.06

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	UniProt:K4C7X9	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF91
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	EnsemblPlantsGene:Solyc06g068040.2
EnsemblPlants:Solyc06g068040.2.1	TMHMM:TMhelix	UniParc:UPI0002766173	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:42165924..42169071

Molecular Weight (calculated)

48584.4 Da

IEP (calculated)

9.187

GRAVY (calculated)

-0.054

Length

437 amino acids

Sequence
(BLAST)

001: MRFYNVSIFA SLLYNTIFSF LLFVNVNSFD SFIQFPTLED SRGKSVSLLY VNEFGAKGDG ITDDTKIFQY VWKRACASFL RPKIIVPIGY SFLVQPIDFV
101: GPCRSKISLI IEGSIVAPKD PKVWDKLDAH KWLYFVKVRH LTVQGGGTIN GMGQKWWATS CKINTTNPCR HAPTAMSFHK CNNLKVRDIR MLNSQQMHIS
201: ISNCINVEVS RMIVEAPAKS PNTDGIHITS SIRVAIKDCT IRTGDDCISI VNNSSSILVK NIACGPGHGI SIGSLGKSNS WSQVHNVCVD GAYFSNTENG
301: VRIKTWQGGR GYVRRISFMN VWMENVSNPI IIDQYYCDSP FPCPNQTSGI HIHSVSFIGI RGTSATKNAI KFACSDSSPC KKLFLKDVQL VSYSGLPTAS
401: FCWKAYGSTS GLNNPPSCFN FVEQTTKNLS NWSDQFI

Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)

001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL

Arabidopsis Description

Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.