Factsheet for TraesCS1B01G382200.2

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G364800.2	Wheat	extracellular	95.89	95.89
TraesCS1D01G370300.3	Wheat	extracellular	94.44	95.13
EES18597	Sorghum	extracellular	79.71	80.88
Zm00001d038874_P002	Maize	extracellular	77.54	77.91
Os05t0542800-02	Rice	extracellular	79.71	77.46
TraesCS1B01G382700.1	Wheat	extracellular	52.66	52.03
TraesCS1B01G382800.1	Wheat	extracellular	53.14	50.69
TraesCS3B01G020300.1	Wheat	extracellular	53.38	49.89
TraesCS1B01G083700.1	Wheat	extracellular	32.13	44.04
TraesCS5B01G468700.1	Wheat	extracellular	42.03	42.44
VIT_09s0002g06380.t01	Wine grape	cytosol	42.03	42.03
CDY54312	Canola	extracellular	44.93	41.89
TraesCS5B01G469000.1	Wheat	extracellular	41.06	41.87
KRH09752	Soybean	extracellular	46.14	41.7
CDY57689	Canola	extracellular	44.93	41.61
GSMUA_Achr3P13670_001	Banana	extracellular	45.41	41.32
Solyc06g068040.2.1	Tomato	nucleus	43.48	41.19
Bra003555.1-P	Field mustard	extracellular	44.44	41.16
AT1G80170.1	Thale cress	extracellular	43.96	40.99
Solyc03g116500.2.1	Tomato	nucleus	44.44	40.71
PGSC0003DMT400001638	Potato	extracellular, plastid	43.72	40.31
TraesCS5B01G468900.1	Wheat	extracellular	40.58	40.1
TraesCS7B01G067800.1	Wheat	extracellular	40.34	39.76
TraesCS2B01G423400.1	Wheat	plastid	32.61	38.46
TraesCS1B01G142700.1	Wheat	plastid	40.82	38.41
TraesCS2B01G423300.1	Wheat	extracellular	35.99	37.16
TraesCS4B01G244300.1	Wheat	extracellular	36.72	35.1
TraesCS2B01G423200.1	Wheat	extracellular	35.99	35.06
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	43.72	34.28
TraesCS3B01G148600.1	Wheat	extracellular	33.82	33.98
TraesCS3B01G148500.1	Wheat	extracellular	32.85	33.92
TraesCS7B01G230600.1	Wheat	extracellular	37.92	32.24
TraesCS1B01G322500.1	Wheat	extracellular	37.2	31.82
TraesCS1B01G448100.1	Wheat	extracellular	36.72	28.68
TraesCS3B01G258600.2	Wheat	extracellular	36.96	28.49

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF4	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1B01G382200	EnsemblPlants:TraesCS1B01G382200.2	SEG:seg

Description

No Description!

Coordinates

chr1B:+:614499927..614502185

Molecular Weight (calculated)

43782.2 Da

IEP (calculated)

7.682

GRAVY (calculated)

-0.057

Length

414 amino acids

Sequence
(BLAST)

001: MVPGARAPAA SVLRGLVALA GAAVLWFSGA AEARVLLTLD DFGAVGDGIA NDTQAFVDAW TAACGSEEQA VLAVPVAKAY QIWPVQLSGP CKKKLKLLIA
101: GTIVAPASPD EWAGRDPMKW LYIYGVDGLS VSGGGTIDGV GQEWWARSCK RKKTQPCNTR PPPRALHFEE CRGVSVQGVT LQNGPQFHLS FTRCTDVKAN
201: FLRVVAPADS PNTDGVHLND SSRVQITDNL ISTGDDCVSM VGNCSDVRVR DISCGPGHGI SIGSLGKNRT TDRVENVRVD TCLLTNTTNG VRIKSWQGGM
301: GSARDLRFES IVMKNVSNPI IIDQYYCDQP TPCANQTEAV EVRKVEFVDV RGTSATAQAI KIACSDTLPC RELELRNVNL TMVGGGAATA SCYRASGKAV
401: GAVAPASCLA KGDP

Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)

001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL

Arabidopsis Description

Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.