Factsheet for TraesCS1B01G083700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	extracellular, mitochondrion, nucleus
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G066400.1	Wheat	cytosol	88.74	70.34
HORVU1Hr1G013520.1	Barley	cytosol	91.39	70.23
TraesCS1D01G066300.1	Wheat	extracellular, golgi	96.36	58.32
TraesCS5B01G468700.1	Wheat	extracellular	58.28	42.93
TraesCS7B01G067800.1	Wheat	extracellular	59.27	42.62
TraesCS5B01G469000.1	Wheat	extracellular	55.96	41.63
TraesCS1B01G142700.1	Wheat	plastid	58.28	40.0
TraesCS5B01G468900.1	Wheat	extracellular	54.97	39.62
TraesCS2B01G423400.1	Wheat	plastid	39.4	33.9
TraesCS4B01G244300.1	Wheat	extracellular	46.36	32.33
TraesCS1B01G382200.2	Wheat	extracellular	44.04	32.13
TraesCS3B01G148600.1	Wheat	extracellular	42.05	30.83
TraesCS2B01G423300.1	Wheat	extracellular	40.73	30.67
TraesCS3B01G148500.1	Wheat	extracellular	39.4	29.68
TraesCS2B01G423200.1	Wheat	extracellular	40.4	28.71
TraesCS1B01G382700.1	Wheat	extracellular	35.43	25.54
TraesCS1B01G322500.1	Wheat	extracellular	39.74	24.79
TraesCS7B01G230600.1	Wheat	extracellular	39.07	24.23
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	42.05	24.05
TraesCS3B01G020300.1	Wheat	extracellular	34.77	23.7
TraesCS1B01G382800.1	Wheat	extracellular	33.77	23.5
TraesCS3B01G258600.2	Wheat	extracellular	39.07	21.97
TraesCS1B01G448100.1	Wheat	extracellular	37.09	21.13

Protein Annotations

EnsemblPlants:TraesCS1B01G083700.1	EnsemblPlantsGene:TraesCS1B01G083700	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF39	PFAM:PF00295
ScanProsite:PS00502	SMART:SM00710	SUPFAM:SSF51126	MapMan:50.3.2	:	:

Description

No Description!

Coordinates

chr1B:-:67642401..67643309

Molecular Weight (calculated)

33105.2 Da

IEP (calculated)

6.582

GRAVY (calculated)

-0.429

Length

302 amino acids

Sequence
(BLAST)

001: MRWWIMFRNV DGLTVTGDGT IDGNGETWWK SSCRVDKKLK CANAPMALLL SRCNNLTVEN IQLLNSQQIH MSVEDCQDVL LKGITITAPG DSPMNDGIHI
101: ARTKDIQVLD CDIKTGDDCM SIETGTENLY ASRITCGPGH GISIGSLGDD NSEARVSNIT VYKAHLSGTT NGVRMKSWQG GKGYAKDVTF EDITMEEVHN
201: PIIIDQNYCT SVDPANPKPC KKQTSAVEFS NIRFKNIRGT SATKEAIKLD CSDTVPCRDI LLQDVKLTFH DRGHNHKHAS ATSVCNNAKL TESGTNVDPK
301: PC

Best Arabidopsis Sequence Match ( AT1G70500.1 )
(BLAST)

001: MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAL5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.