Factsheet for TraesCS3B01G020300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G024500.1	Wheat	extracellular	92.78	92.99
TraesCS3D01G021700.1	Wheat	extracellular	92.33	92.74
TraesCS1B01G382800.1	Wheat	extracellular	83.75	85.48
HORVU3Hr1G006180.2	Barley	extracellular	81.49	83.95
Os05t0542900-01	Rice	extracellular	61.4	61.12
TraesCS1B01G382700.1	Wheat	extracellular	55.3	58.47
TraesCS1B01G382200.2	Wheat	extracellular	49.89	53.38
Zm00001d038875_P001	Maize	extracellular	56.21	52.87
KXG22449	Sorghum	extracellular, golgi	54.85	51.92
VIT_09s0002g06380.t01	Wine grape	cytosol	37.02	39.61
KRH09752	Soybean	extracellular	40.41	39.08
PGSC0003DMT400001638	Potato	extracellular, plastid	39.05	38.53
Solyc03g116500.2.1	Tomato	nucleus	39.28	38.5
GSMUA_Achr3P13670_001	Banana	extracellular	39.28	38.24
CDY54312	Canola	extracellular	37.47	37.39
Solyc06g068040.2.1	Tomato	nucleus	36.79	37.3
Bra003555.1-P	Field mustard	extracellular	37.47	37.14
CDY57689	Canola	extracellular	37.47	37.14
AT1G80170.1	Thale cress	extracellular	36.34	36.26
TraesCS1B01G083700.1	Wheat	extracellular	23.7	34.77
TraesCS5B01G468700.1	Wheat	extracellular	31.6	34.15
TraesCS2B01G423300.1	Wheat	extracellular	30.7	33.92
TraesCS5B01G469000.1	Wheat	extracellular	30.93	33.74
TraesCS2B01G423400.1	Wheat	plastid	26.64	33.62
TraesCS7B01G067800.1	Wheat	extracellular	31.83	33.57
TraesCS4B01G244300.1	Wheat	extracellular	32.73	33.49
TraesCS5B01G468900.1	Wheat	extracellular	31.6	33.41
TraesCS1B01G142700.1	Wheat	plastid	31.83	32.05
TraesCS2B01G423200.1	Wheat	extracellular	30.7	32.0
TraesCS1B01G322500.1	Wheat	extracellular	33.18	30.37
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	35.44	29.73
TraesCS3B01G148600.1	Wheat	extracellular	27.31	29.37
TraesCS3B01G148500.1	Wheat	extracellular	26.41	29.18
TraesCS1B01G448100.1	Wheat	extracellular	32.05	26.79
TraesCS3B01G258600.2	Wheat	extracellular	32.05	26.44
TraesCS7B01G230600.1	Wheat	extracellular	28.89	26.28

Protein Annotations

EnsemblPlants:TraesCS3B01G020300.1	EnsemblPlantsGene:TraesCS3B01G020300	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF4	PFAM:PF00295	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF51126	TMHMM:TMhelix	MapMan:50.3.2	:	:

Description

No Description!

Coordinates

chr3B:-:8684971..8686910

Molecular Weight (calculated)

47465.3 Da

IEP (calculated)

6.232

GRAVY (calculated)

-0.163

Length

443 amino acids

Sequence
(BLAST)

001: MALRARTRLL LAALAGAVAL LLPGGAVEAR VLLSLDDFGA VGDGIANDTQ AFVDAWKSAC ATGGTTYLNV PAGRSYQIWP VTLAGPCRGE IKLLISGNII
101: APEDPEEWWD GDQGRWLHFR GVGDLSLSGG GIVDGRGQQW WAGSCEDENC TTYRPYDVAP MALHFEGCRD VSVKGITVQN GQRQHLVFTR CHDVEANYLR
201: VTSPEYSPGT VGVLVVSSTD VHIKHDLFSV GGDCVSIVGN SSDIRVKAVS CGPGLGISIG GLGENQSNDR IHKIKMDTML LSNTKNGVRI KTYKNGCGFA
301: RKVKFAHIMM RNVANPIVID QHYYSASNSN RGTPCGTPNV SAVAVEKIKY IDITGTSATE RAVTFACSDA MPCRRLYLDG VNLKTAGGGS TSAYCHQAFG
401: KHVGDVLPES CLIKEKEDKF IQLHAPTAGT PQGDTEDEED DDL

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.