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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY57689 Canola extracellular 97.97 97.32
Bra003555.1-P Field mustard extracellular 97.07 96.42
AT1G80170.1 Thale cress extracellular 86.26 86.26
KRH09752 Soybean extracellular 55.41 53.71
VIT_09s0002g06380.t01 Wine grape cytosol 49.55 53.14
PGSC0003DMT400001638 Potato extracellular, plastid 53.15 52.56
Solyc03g116500.2.1 Tomato nucleus 53.38 52.43
GSMUA_Achr3P13670_001 Banana extracellular 53.15 51.87
Solyc06g068040.2.1 Tomato nucleus 50.68 51.49
EES18597 Sorghum extracellular 42.12 45.83
Zm00001d038874_P002 Maize extracellular 42.34 45.63
TraesCS1A01G364800.2 Wheat extracellular 41.89 44.93
TraesCS1B01G382200.2 Wheat extracellular 41.89 44.93
Os05t0542800-02 Rice extracellular 42.57 44.37
TraesCS1D01G370300.3 Wheat extracellular 40.99 44.28
CDY06902 Canola extracellular 42.12 43.19
CDY14791 Canola extracellular 41.89 42.96
CDY48768 Canola extracellular 41.89 42.76
CDY04708 Canola plastid 26.58 42.6
CDX79907 Canola extracellular 41.67 42.53
CDY47139 Canola extracellular 43.47 41.33
CDY11585 Canola extracellular 43.47 41.33
TraesCS1D01G370700.1 Wheat extracellular 38.51 40.81
CDY41695 Canola extracellular 39.86 40.69
TraesCS1B01G382700.1 Wheat extracellular 38.29 40.57
CDX72025 Canola extracellular 39.41 40.51
CDX95284 Canola extracellular 36.71 40.35
CDY67535 Canola extracellular 28.15 40.19
CDY25786 Canola cytosol 40.09 39.91
CDY54292 Canola cytosol 39.86 39.69
CDY50769 Canola extracellular 30.41 39.47
CDY39404 Canola extracellular 35.14 39.1
CDY69377 Canola extracellular 35.14 39.0
CDX67693 Canola extracellular 37.84 38.8
CDY28005 Canola extracellular 36.49 38.48
TraesCS1D01G370800.1 Wheat extracellular 37.39 38.25
TraesCS1B01G382800.1 Wheat extracellular 37.39 38.25
CDY35976 Canola extracellular 36.04 38.0
CDX73440 Canola extracellular 34.23 38.0
CDX74019 Canola extracellular 37.39 37.99
CDY07963 Canola extracellular 37.39 37.9
TraesCS3A01G024500.1 Wheat extracellular 37.61 37.78
Os05t0542900-01 Rice extracellular 37.84 37.75
CDY39399 Canola extracellular 33.78 37.5
TraesCS3B01G020300.1 Wheat extracellular 37.39 37.47
TraesCS1A01G365300.1 Wheat extracellular 36.71 37.47
CDY37571 Canola cytosol 31.53 37.43
CDX69569 Canola extracellular 36.94 37.36
CDY09873 Canola extracellular 36.94 37.36
HORVU1Hr1G079130.2 Barley extracellular 36.49 37.33
TraesCS1A01G365200.1 Wheat extracellular 38.51 37.25
CDY38648 Canola cytosol 31.31 37.17
CDY56952 Canola extracellular 34.68 36.58
TraesCS3D01G021700.1 Wheat extracellular 36.26 36.51
HORVU3Hr1G006180.2 Barley extracellular 35.14 36.28
CDX74418 Canola extracellular 34.46 36.26
CDY44150 Canola extracellular, golgi, plastid 40.77 36.06
CDX93644 Canola extracellular 37.39 35.17
CDY02729 Canola extracellular 33.78 35.05
Zm00001d038875_P001 Maize extracellular 37.16 35.03
CDX89966 Canola extracellular 38.74 35.03
CDX72553 Canola extracellular 31.76 34.99
CDX85471 Canola extracellular 31.98 34.98
CDY43307 Canola extracellular 37.16 34.88
KXG22449 Sorghum extracellular, golgi 36.71 34.83
CDY15246 Canola extracellular 38.51 34.83
CDY47032 Canola extracellular 31.53 34.74
CDX77909 Canola extracellular 38.29 34.62
HORVU1Hr1G079140.6 Barley plastid 37.84 34.36
CDX97703 Canola extracellular 34.01 33.41
CDX75843 Canola extracellular 33.78 33.11
CDX68839 Canola cytosol 30.18 33.0
CDY30105 Canola extracellular 33.33 32.96
CDY41445 Canola endoplasmic reticulum 41.22 32.91
CDY58462 Canola extracellular 33.56 32.89
CDY13645 Canola extracellular 34.68 32.77
CDX83631 Canola extracellular 34.68 32.7
CDX75239 Canola cytosol 29.73 32.51
CDY30107 Canola extracellular 33.33 32.46
CDX97704 Canola extracellular 33.11 32.24
CDY54228 Canola extracellular, golgi, vacuole 37.61 31.63
CDY16952 Canola extracellular 30.86 31.57
CDX93397 Canola extracellular, golgi, vacuole 37.61 31.33
CDY37962 Canola extracellular, golgi, vacuole 37.39 31.2
CDX69397 Canola extracellular 28.38 31.19
CDY20612 Canola extracellular 36.49 30.51
CDY20962 Canola extracellular, golgi, vacuole 36.49 30.51
CDY34877 Canola extracellular, golgi 33.56 30.47
CDY61868 Canola extracellular 37.61 30.42
CDY39884 Canola extracellular 30.41 30.34
CDY71357 Canola extracellular, vacuole 21.4 29.97
CDY47212 Canola extracellular 36.04 29.85
CDY50367 Canola extracellular, golgi 35.81 29.66
CDY06100 Canola extracellular 27.7 28.81
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078IWD8UniProt:A0A078IWD8EnsemblPlants:CDY54312ProteinID:CDY54312
ProteinID:CDY54312.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0016787GO:GO:0016798EnsemblPlantsGene:GSBRNA2T00013800001InterPro:Glyco_hydro_28InterPro:IPR012334
PFAM:PF00295ScanProsite:PS00502PANTHER:PTHR31375PANTHER:PTHR31375:SF91InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulence
SUPFAM:SSF51126SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0004EF2889SEG:seg:
Description
BnaC06g43100DBnaC06g43100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWD8]
Coordinates
chrLK033301:-:22961..24973
Molecular Weight (calculated)
48232.1 Da
IEP (calculated)
8.383
GRAVY (calculated)
-0.204
Length
444 amino acids
Sequence
(BLAST)
001: MSYLCNIVVL FILVVFSLSL TASNANSFES LLQLPRRPPR STRTRPRSER LLHVGHFGAK GNGFTDDTKA FEDAWKTACS SKGKTRVLVP ENYTSLVRPI
101: DLSGPCKARL TLQISGTIIA PDDPDAWEGL NPRKWLYFHS VSRFTVEGGG TVNGMGQEWW RRSCKHNHSN PCRGAPTALT FHKCKNMRVE NLSVIDSQQM
201: HIAFTSCRRV TISALKVIAP GSSPNTDGIH ISASRGIVVD NSTVSTGDDC VSIVKNSSQI SISNIICGPG HGISIGSIGK SKSWEEVKDV TVDTAFISDT
301: ANGVRIKTWQ GGSGLVSKII FRNINMNNVS NPIIIDQYYC DSKKPCANQT SAVSIEKISF VNVHGTSATK QAIKISCSDA SPCRNIVLQD IDLEPSKGDG
401: YTESFCWEAY GSSSGQVYPP SCLSGDESFL EQSVQSGITS VSYL
Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)
001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL
Arabidopsis Description
Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.