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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra040077.1-P Field mustard extracellular 80.67 98.36
AT4G32380.1 Thale cress extracellular 58.65 57.62
CDX68839 Canola cytosol 51.46 56.4
CDX75239 Canola cytosol 50.79 55.66
CDY50769 Canola extracellular 34.61 45.03
CDY39399 Canola extracellular 38.43 42.75
CDY47032 Canola extracellular 38.65 42.68
CDX72553 Canola extracellular 38.43 42.43
CDY39404 Canola extracellular 37.75 42.11
CDX73440 Canola extracellular 37.53 41.75
CDY69377 Canola extracellular 37.08 41.25
PGSC0003DMT400056828 Potato extracellular 35.06 39.2
CDX85471 Canola extracellular 35.28 38.67
PGSC0003DMT400008955 Potato extracellular 29.89 38.22
TraesCS2B01G423400.1 Wheat plastid 28.09 35.61
CDY02729 Canola extracellular 34.16 35.51
CDY16952 Canola extracellular 34.38 35.25
CDX69397 Canola extracellular 31.46 34.65
CDX75843 Canola extracellular 34.83 34.22
CDX97704 Canola extracellular 35.06 34.21
CDY30107 Canola extracellular 35.06 34.21
CDY30105 Canola extracellular 34.16 33.85
KXG26899 Sorghum extracellular 31.91 33.81
CDY58462 Canola extracellular 34.38 33.77
CDY37571 Canola cytosol 28.31 33.69
GSMUA_Achr11P... Banana extracellular 31.46 33.65
TraesCS2D01G402300.1 Wheat extracellular 25.17 33.63
CDX97703 Canola extracellular 34.16 33.63
CDY38648 Canola cytosol 28.09 33.42
TraesCS2D01G402200.1 Wheat extracellular 29.21 33.25
TraesCS2A01G405600.1 Wheat extracellular 23.82 33.23
CDY48768 Canola extracellular 31.91 32.64
CDX79907 Canola extracellular 31.91 32.64
GSMUA_Achr9P22320_001 Banana extracellular 30.11 32.45
TraesCS2A01G405100.1 Wheat extracellular 30.34 32.37
CDX67693 Canola extracellular 31.46 32.33
GSMUA_Achr4P13200_001 Banana extracellular 30.56 32.23
CDX72025 Canola extracellular 31.01 31.94
CDY14791 Canola extracellular 31.01 31.87
TraesCS2D01G402100.1 Wheat extracellular 28.99 31.85
CDY07963 Canola extracellular 31.24 31.74
TraesCS2B01G423300.1 Wheat extracellular 28.54 31.67
CDY06902 Canola extracellular 30.79 31.64
TraesCS2A01G405300.1 Wheat extracellular, nucleus 28.76 31.6
CDX74019 Canola extracellular 31.01 31.58
HORVU2Hr1G096130.1 Barley extracellular 28.54 31.36
CDY28005 Canola extracellular 29.66 31.35
CDY35976 Canola extracellular 29.44 31.12
TraesCS2D01G402000.1 Wheat extracellular 29.89 31.07
TraesCS2B01G423200.1 Wheat extracellular 29.66 31.06
CDY56952 Canola extracellular 29.21 30.88
CDX74418 Canola extracellular 29.21 30.81
CDY54312 Canola extracellular 30.34 30.41
CDY57689 Canola extracellular 30.11 29.98
CDY09873 Canola extracellular 29.44 29.84
CDX69569 Canola extracellular 29.21 29.61
CDY04708 Canola plastid 18.43 29.6
CDY67535 Canola extracellular 20.45 29.26
CDY41695 Canola extracellular 27.19 27.82
CDY11585 Canola extracellular 28.99 27.62
CDY47139 Canola extracellular 28.76 27.41
Zm00001d039668_P001 Maize plastid 26.29 26.77
CDX95284 Canola extracellular 24.27 26.73
CDY54292 Canola cytosol 26.52 26.46
CDY25786 Canola cytosol 26.52 26.46
CDX83631 Canola extracellular 27.19 25.69
CDY13645 Canola extracellular 26.97 25.53
CDX77909 Canola extracellular 27.87 25.25
CDX93644 Canola extracellular 26.74 25.21
CDY43307 Canola extracellular 26.74 25.16
CDX89966 Canola extracellular 27.64 25.05
CDY15246 Canola extracellular 27.42 24.85
CDY44150 Canola extracellular, golgi, plastid 27.87 24.7
CDY61868 Canola extracellular 29.44 23.86
CDY54228 Canola extracellular, golgi, vacuole 27.42 23.11
CDX93397 Canola extracellular, golgi, vacuole 27.64 23.08
CDY71357 Canola extracellular, vacuole 16.4 23.03
CDY47212 Canola extracellular 27.64 22.95
CDY50367 Canola extracellular, golgi 27.64 22.95
CDY37962 Canola extracellular, golgi, vacuole 27.42 22.93
CDY06100 Canola extracellular 21.8 22.72
CDY20962 Canola extracellular, golgi, vacuole 26.97 22.6
CDY20612 Canola extracellular 26.97 22.6
Os01t0172900-00 Rice nucleus 14.83 22.37
CDY41445 Canola endoplasmic reticulum 27.64 22.12
CDY34877 Canola extracellular, golgi 24.04 21.88
GSMUA_Achr4P06370_001 Banana extracellular 31.46 18.57
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078HRF4UniProt:A0A078HRF4EnsemblPlants:CDY39884ProteinID:CDY39884
ProteinID:CDY39884.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005575GO:GO:0005975
GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016798
EnsemblPlantsGene:GSBRNA2T00068726001InterPro:Glyco_hydro_28InterPro:IPR012334PFAM:PF00295ScanProsite:PS00502PANTHER:PTHR31375
PANTHER:PTHR31375:SF42InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSUPFAM:SSF51126TMHMM:TMhelixUniParc:UPI0004EE7653
SEG:seg:::::
Description
BnaC03g67330DBnaC03g67330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRF4]
Coordinates
chrLK032459:+:222584..224904
Molecular Weight (calculated)
48380.8 Da
IEP (calculated)
6.135
GRAVY (calculated)
-0.213
Length
445 amino acids
Sequence
(BLAST)
001: MVRQKYIPLQ IFIHGFQLLL SVLLVSSFYA HYGDSDSEFI SVRDFLSDSG NTNADQSQAI QDAWKALCAG KSKSLVIHAN EVYTLLPQVF QGPCVASNPH
101: IQIDGKIEAP KLVKDWGSNK PENWLSFDKV SGLTITGSGL LDPHGESWWS TVKFDSRPQA LQFNRCNNLI YNGLTQRNSP KNHISISNCI QATSSNLHLI
201: APANSPNTDG IDISLSQKIN IFSSAIQTGD DCIAIKTGSS DINITSVDCG PGHGISIGSL GEGGATETVE NVHVQHCTFT GAENAARIKT WPGGGGYARN
301: IWYEDITLIN TKFPIIIDQQ YDDDSYKYAK GSAVKVSDVT FRYFRGTCAQ PIAINLDCDK IGCGNIVLEH INITSSSPQT SPSAICRFAD VTSSFVNIDM
401: KCVNHADLQG PSPSPELPSQ YDQPHAQLPQ ASAPHAQARP FLSFL
Best Arabidopsis Sequence Match ( AT4G32380.1 )
(BLAST)
001: MGFEILLSVL LIASYHLQYG NGRMILTMKD FISNSNSTNV DHSQAFQNAW RALCGGKGGS ASFVIQAHET YTIQPQLLEG PCMPRNIHIQ IDGTIEAPKM
101: ANDWGRNKLD CWLCFEKVTG LVLTGSGVLN THGESWWSSV ALQSRPVAVR FFGCQNILYN GLTQINSPRN HITILDSNNA TLSNLHLIAP ASSPNTDGID
201: ISHSQNINIM SSTIKTGDDC VAIKRNSYNI NVTYVTCGPG HGISIGSLGE GGASEVVQNV NVRHCTFTGT QNGARIKTWP GGQGFVKNIL YEDITLINAN
301: FPIIIDQQYR DNAGQYKQSA GATAVKVSDV TFRSFTGTCA APIAIKLDCD PNTGCDNIVM EQINIASSSP KTPLTSYCKF AHVVSRFVSI PITCSFHTED
401: SQPASLNPQP SAPYAISPTT PHTQPHAPTT QPPLFFRFYT NFKAFLGRLG RNC
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT4G32380]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.