Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040077.1-P | Field mustard | extracellular | 47.9 | 59.45 |
| CDY39884 | Canola | extracellular | 57.62 | 58.65 |
| AT4G32370.1 | Thale cress | extracellular | 39.29 | 52.05 |
| AT4G32375.1 | Thale cress | extracellular | 44.81 | 47.99 |
| AT5G44830.1 | Thale cress | extracellular | 29.58 | 40.36 |
| AT4G35670.1 | Thale cress | extracellular | 34.88 | 40.1 |
| AT5G44840.1 | Thale cress | extracellular | 32.23 | 37.34 |
| AT1G80140.1 | Thale cress | extracellular | 27.37 | 36.9 |
| PGSC0003DMT400056828 | Potato | extracellular | 31.57 | 35.93 |
| AT5G17200.1 | Thale cress | extracellular | 32.23 | 34.68 |
| PGSC0003DMT400008955 | Potato | extracellular | 26.49 | 34.48 |
| TraesCS2B01G423400.1 | Wheat | plastid | 26.27 | 33.9 |
| GSMUA_Achr11P... | Banana | extracellular | 30.68 | 33.41 |
| AT5G27530.1 | Thale cress | cytosol | 33.77 | 33.41 |
| AT3G15720.1 | Thale cress | extracellular | 33.55 | 33.33 |
| KXG26899 | Sorghum | extracellular | 30.24 | 32.62 |
| TraesCS2D01G402200.1 | Wheat | extracellular | 28.04 | 32.48 |
| TraesCS2D01G402300.1 | Wheat | extracellular | 23.62 | 32.13 |
| TraesCS2A01G405600.1 | Wheat | extracellular | 22.52 | 31.97 |
| TraesCS2A01G405300.1 | Wheat | extracellular, nucleus | 28.48 | 31.85 |
| TraesCS2D01G402100.1 | Wheat | extracellular | 28.26 | 31.6 |
| TraesCS2B01G423300.1 | Wheat | extracellular | 27.59 | 31.17 |
| GSMUA_Achr4P13200_001 | Banana | extracellular | 28.92 | 31.04 |
| HORVU2Hr1G096130.1 | Barley | extracellular | 27.59 | 30.86 |
| TraesCS2A01G405100.1 | Wheat | extracellular | 28.04 | 30.46 |
| AT5G39910.1 | Thale cress | extracellular | 24.94 | 30.29 |
| AT2G41850.1 | Thale cress | extracellular | 28.92 | 30.25 |
| AT3G07970.1 | Thale cress | extracellular | 29.14 | 30.07 |
| TraesCS2B01G423200.1 | Wheat | extracellular | 28.04 | 29.88 |
| TraesCS2D01G402000.1 | Wheat | extracellular | 28.04 | 29.67 |
| AT1G80170.1 | Thale cress | extracellular | 28.7 | 29.28 |
| AT3G57510.1 | Thale cress | extracellular | 27.81 | 29.23 |
| GSMUA_Achr9P22320_001 | Banana | extracellular | 26.49 | 29.06 |
| AT1G56710.1 | Thale cress | extracellular | 27.37 | 28.57 |
| AT5G14650.1 | Thale cress | extracellular | 26.05 | 27.13 |
| AT1G23460.1 | Thale cress | extracellular | 27.15 | 26.74 |
| AT1G70500.1 | Thale cress | extracellular | 27.59 | 26.71 |
| Zm00001d039668_P001 | Maize | plastid | 25.39 | 26.32 |
| AT4G01890.1 | Thale cress | extracellular | 26.49 | 25.7 |
| AT1G02460.1 | Thale cress | extracellular | 27.15 | 25.05 |
| AT1G48100.1 | Thale cress | extracellular | 25.39 | 24.21 |
| AT3G26610.1 | Thale cress | extracellular | 24.94 | 24.04 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 26.93 | 22.93 |
| AT1G60590.1 | Thale cress | extracellular | 25.61 | 21.48 |
| Os01t0172900-00 | Rice | nucleus | 13.69 | 21.02 |
| GSMUA_Achr4P06370_001 | Banana | extracellular | 28.92 | 17.37 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:829373 | ProteinID:AEE86050.2 | ArrayExpress:AT4G32380 | EnsemblPlantsGene:AT4G32380 |
| RefSeq:AT4G32380 | TAIR:AT4G32380 | RefSeq:AT4G32380-TAIR-G | EnsemblPlants:AT4G32380.1 | TAIR:AT4G32380.1 | UniProt:F4JUA6 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_001320113.1 | PFAM:PF00295 |
| PANTHER:PTHR31375 | PANTHER:PTHR31375:SF42 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 |
| SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI000849606D | SEG:seg | : | : |
Description
Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT4G32380]
Coordinates
chr4:+:15632712..15635494
Molecular Weight (calculated)
49268.5 Da
IEP (calculated)
7.821
GRAVY (calculated)
-0.140
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFEILLSVL LIASYHLQYG NGRMILTMKD FISNSNSTNV DHSQAFQNAW RALCGGKGGS ASFVIQAHET YTIQPQLLEG PCMPRNIHIQ IDGTIEAPKM
101: ANDWGRNKLD CWLCFEKVTG LVLTGSGVLN THGESWWSSV ALQSRPVAVR FFGCQNILYN GLTQINSPRN HITILDSNNA TLSNLHLIAP ASSPNTDGID
201: ISHSQNINIM SSTIKTGDDC VAIKRNSYNI NVTYVTCGPG HGISIGSLGE GGASEVVQNV NVRHCTFTGT QNGARIKTWP GGQGFVKNIL YEDITLINAN
301: FPIIIDQQYR DNAGQYKQSA GATAVKVSDV TFRSFTGTCA APIAIKLDCD PNTGCDNIVM EQINIASSSP KTPLTSYCKF AHVVSRFVSI PITCSFHTED
401: SQPASLNPQP SAPYAISPTT PHTQPHAPTT QPPLFFRFYT NFKAFLGRLG RNC
101: ANDWGRNKLD CWLCFEKVTG LVLTGSGVLN THGESWWSSV ALQSRPVAVR FFGCQNILYN GLTQINSPRN HITILDSNNA TLSNLHLIAP ASSPNTDGID
201: ISHSQNINIM SSTIKTGDDC VAIKRNSYNI NVTYVTCGPG HGISIGSLGE GGASEVVQNV NVRHCTFTGT QNGARIKTWP GGQGFVKNIL YEDITLINAN
301: FPIIIDQQYR DNAGQYKQSA GATAVKVSDV TFRSFTGTCA APIAIKLDCD PNTGCDNIVM EQINIASSSP KTPLTSYCKF AHVVSRFVSI PITCSFHTED
401: SQPASLNPQP SAPYAISPTT PHTQPHAPTT QPPLFFRFYT NFKAFLGRLG RNC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.