Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- golgi 4
- extracellular 6
- mitochondrion 1
- vacuole 4
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001605.1-P | Field mustard | extracellular | 79.39 | 80.09 |
| CDX75843 | Canola | extracellular | 79.39 | 79.91 |
| Bra027210.1-P | Field mustard | extracellular | 79.61 | 79.61 |
| CDY58462 | Canola | extracellular | 78.95 | 79.47 |
| CDY30107 | Canola | extracellular | 79.17 | 79.17 |
| CDX97704 | Canola | extracellular | 79.17 | 79.17 |
| CDY30105 | Canola | extracellular | 76.97 | 78.17 |
| CDX97703 | Canola | extracellular | 76.54 | 77.21 |
| Bra027211.1-P | Field mustard | extracellular | 75.88 | 76.72 |
| AT4G35670.1 | Thale cress | extracellular | 39.91 | 46.19 |
| AT5G44830.1 | Thale cress | extracellular | 33.33 | 45.78 |
| AT5G44840.1 | Thale cress | extracellular | 38.6 | 45.01 |
| VIT_09s0002g06650.t01 | Wine grape | extracellular | 39.47 | 44.55 |
| VIT_09s0002g06610.t01 | Wine grape | extracellular | 37.94 | 44.47 |
| VIT_09s0002g06580.t01 | Wine grape | cytosol | 37.72 | 43.99 |
| PGSC0003DMT400056828 | Potato | extracellular | 37.94 | 43.47 |
| PGSC0003DMT400008955 | Potato | extracellular | 32.46 | 42.53 |
| AT5G17200.1 | Thale cress | extracellular | 38.16 | 41.33 |
| KRH23567 | Soybean | extracellular | 35.31 | 40.15 |
| AT4G32370.1 | Thale cress | extracellular | 30.04 | 40.06 |
| AT5G27530.1 | Thale cress | cytosol | 39.91 | 39.74 |
| Solyc03g116580.2.1 | Tomato | extracellular | 37.94 | 39.59 |
| KXG26899 | Sorghum | extracellular | 36.18 | 39.29 |
| GSMUA_Achr11P... | Banana | extracellular | 35.53 | 38.94 |
| AT1G80140.1 | Thale cress | extracellular | 28.51 | 38.69 |
| AT5G39910.1 | Thale cress | extracellular | 31.58 | 38.61 |
| GSMUA_Achr9P22320_001 | Banana | extracellular | 34.87 | 38.5 |
| TraesCS2B01G423300.1 | Wheat | extracellular | 33.77 | 38.4 |
| KRH09740 | Soybean | extracellular | 35.53 | 38.12 |
| TraesCS2B01G423400.1 | Wheat | plastid | 29.17 | 37.89 |
| HORVU2Hr1G096130.1 | Barley | extracellular | 33.55 | 37.78 |
| GSMUA_Achr4P13200_001 | Banana | extracellular | 34.65 | 37.44 |
| TraesCS2D01G402100.1 | Wheat | extracellular | 33.11 | 37.28 |
| TraesCS2A01G405300.1 | Wheat | extracellular, nucleus | 33.11 | 37.28 |
| AT3G57510.1 | Thale cress | extracellular | 34.87 | 36.89 |
| TraesCS2A01G405100.1 | Wheat | extracellular | 33.11 | 36.21 |
| TraesCS2A01G405600.1 | Wheat | extracellular | 25.22 | 36.05 |
| AT2G41850.1 | Thale cress | extracellular | 34.21 | 36.03 |
| TraesCS2D01G402200.1 | Wheat | extracellular | 30.7 | 35.81 |
| AT3G07970.1 | Thale cress | extracellular | 34.43 | 35.76 |
| TraesCS2B01G423200.1 | Wheat | extracellular | 32.89 | 35.29 |
| TraesCS2D01G402300.1 | Wheat | extracellular | 25.44 | 34.83 |
| TraesCS2D01G402000.1 | Wheat | extracellular | 32.68 | 34.81 |
| AT5G14650.1 | Thale cress | extracellular | 33.11 | 34.71 |
| AT1G56710.1 | Thale cress | extracellular | 32.68 | 34.33 |
| AT1G23460.1 | Thale cress | extracellular | 34.43 | 34.13 |
| AT1G80170.1 | Thale cress | extracellular | 33.11 | 34.01 |
| AT4G32380.1 | Thale cress | extracellular | 33.33 | 33.55 |
| Zm00001d039668_P001 | Maize | plastid | 31.14 | 32.49 |
| AT1G70500.1 | Thale cress | extracellular | 32.89 | 32.05 |
| AT4G01890.1 | Thale cress | extracellular | 32.68 | 31.91 |
| AT3G26610.1 | Thale cress | extracellular | 32.46 | 31.49 |
| AT1G02460.1 | Thale cress | extracellular | 33.77 | 31.36 |
| AT1G48100.1 | Thale cress | extracellular | 31.14 | 29.89 |
| AT4G32375.1 | Thale cress | extracellular | 26.54 | 28.61 |
| Os01t0172900-00 | Rice | nucleus | 18.2 | 28.14 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 30.26 | 25.94 |
| AT1G60590.1 | Thale cress | extracellular | 30.04 | 25.37 |
| GSMUA_Achr4P06370_001 | Banana | extracellular | 33.33 | 20.16 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:820815 | ProteinID:AEE75718.1 | ProteinID:ANM65726.1 | ArrayExpress:AT3G15720 |
| EnsemblPlantsGene:AT3G15720 | RefSeq:AT3G15720 | TAIR:AT3G15720 | RefSeq:AT3G15720-TAIR-G | EnsemblPlants:AT3G15720.1 | TAIR:AT3G15720.1 |
| ProteinID:BAB02303.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009505 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0016829 | GO:GO:0030312 | GO:GO:0031225 | GO:GO:0046658 | GO:GO:0071555 |
| InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_001327674.1 | RefSeq:NP_566524.1 | PFAM:PF00295 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | ScanProsite:PS00502 | PANTHER:PTHR31375 |
| PANTHER:PTHR31375:SF42 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q9LW07 | SMART:SM00710 |
| SUPFAM:SSF51126 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI00000A0AAF | : | : |
Description
Probable polygalacturonase At3g15720 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW07]
Coordinates
chr3:-:5325127..5327672
Molecular Weight (calculated)
49302.6 Da
IEP (calculated)
5.249
GRAVY (calculated)
-0.074
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKKTWFLNF SLFFLQIFTS SNALDVTQFG AVGDGVTDDS QAFLKAWEAV CSGTGDGQFV VPAGMTFMLQ PLKFQGSCKS TPVFVQMLGK LVAPSKGNWK
101: GDKDQWILFT DIEGLVIEGD GEINGQGSSW WEHKGSRPTA LKFRSCNNLR LSGLTHLDSP MAHIHISECN YVTISSLRIN APESSPNTDG IDVGASSNVV
201: IQDCIIATGD DCIAINSGTS NIHISGIDCG PGHGISIGSL GKDGETATVE NVCVQNCNFR GTMNGARIKT WQGGSGYARM ITFNGITLDN VENPIIIDQF
301: YNGGDSDNAK DRKSSAVEVS KVVFSNFIGT SKSEYGVDFR CSERVPCTEI FLRDMKIETA SSGSGQVAQG QCLNVRGAST IAVPGLECLE LSTDMFSSAQ
401: LLEQTCMSAQ SVQPRTTTQP MQDPIWVFQS RGKQLRVYNI AILVSFISLV TYILAR
101: GDKDQWILFT DIEGLVIEGD GEINGQGSSW WEHKGSRPTA LKFRSCNNLR LSGLTHLDSP MAHIHISECN YVTISSLRIN APESSPNTDG IDVGASSNVV
201: IQDCIIATGD DCIAINSGTS NIHISGIDCG PGHGISIGSL GKDGETATVE NVCVQNCNFR GTMNGARIKT WQGGSGYARM ITFNGITLDN VENPIIIDQF
301: YNGGDSDNAK DRKSSAVEVS KVVFSNFIGT SKSEYGVDFR CSERVPCTEI FLRDMKIETA SSGSGQVAQG QCLNVRGAST IAVPGLECLE LSTDMFSSAQ
401: LLEQTCMSAQ SVQPRTTTQP MQDPIWVFQS RGKQLRVYNI AILVSFISLV TYILAR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.