Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- golgi 4
- extracellular 7
- plastid 1
- vacuole 3
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72553 | Canola | extracellular | 72.33 | 70.72 |
| CDY47032 | Canola | extracellular | 72.33 | 70.72 |
| AT5G27530.1 | Thale cress | cytosol | 69.8 | 60.04 |
| AT5G44830.1 | Thale cress | extracellular | 48.98 | 58.13 |
| AT5G44840.1 | Thale cress | extracellular | 56.6 | 57.03 |
| PGSC0003DMT400056828 | Potato | extracellular | 43.91 | 43.47 |
| PGSC0003DMT400008955 | Potato | extracellular | 37.56 | 42.53 |
| AT4G32370.1 | Thale cress | extracellular | 35.03 | 40.35 |
| AT5G17200.1 | Thale cress | extracellular | 42.89 | 40.14 |
| AT3G15720.1 | Thale cress | extracellular | 46.19 | 39.91 |
| TraesCS2B01G423400.1 | Wheat | plastid | 35.53 | 39.89 |
| TraesCS2A01G405300.1 | Wheat | extracellular, nucleus | 40.86 | 39.75 |
| TraesCS2D01G402100.1 | Wheat | extracellular | 40.86 | 39.75 |
| TraesCS2B01G423300.1 | Wheat | extracellular | 40.36 | 39.65 |
| TraesCS2D01G402200.1 | Wheat | extracellular | 38.83 | 39.13 |
| TraesCS2A01G405600.1 | Wheat | extracellular | 31.47 | 38.87 |
| TraesCS2A01G405100.1 | Wheat | extracellular | 41.12 | 38.85 |
| TraesCS2D01G402300.1 | Wheat | extracellular | 32.74 | 38.74 |
| KRH05150 | Soybean | extracellular | 26.14 | 38.29 |
| HORVU2Hr1G096130.1 | Barley | extracellular | 39.34 | 38.27 |
| AT1G80140.1 | Thale cress | extracellular | 32.49 | 38.1 |
| GSMUA_Achr11P... | Banana | extracellular | 39.85 | 37.74 |
| GSMUA_Achr9P22320_001 | Banana | extracellular | 39.34 | 37.53 |
| GSMUA_Achr4P13200_001 | Banana | extracellular | 40.1 | 37.44 |
| TraesCS2D01G402000.1 | Wheat | extracellular | 40.36 | 37.15 |
| KXG26899 | Sorghum | extracellular | 39.59 | 37.14 |
| AT5G39910.1 | Thale cress | extracellular | 35.03 | 37.0 |
| TraesCS2B01G423200.1 | Wheat | extracellular | 39.85 | 36.94 |
| AT5G14650.1 | Thale cress | extracellular | 38.83 | 35.17 |
| AT4G32380.1 | Thale cress | extracellular | 40.1 | 34.88 |
| AT3G57510.1 | Thale cress | extracellular | 37.82 | 34.57 |
| AT2G41850.1 | Thale cress | extracellular | 37.56 | 34.18 |
| AT1G80170.1 | Thale cress | extracellular | 38.32 | 34.01 |
| AT3G07970.1 | Thale cress | extracellular | 37.82 | 33.94 |
| AT4G32375.1 | Thale cress | extracellular | 35.79 | 33.33 |
| Zm00001d039668_P001 | Maize | plastid | 35.79 | 32.27 |
| AT1G56710.1 | Thale cress | extracellular | 35.28 | 32.03 |
| AT1G70500.1 | Thale cress | extracellular | 36.55 | 30.77 |
| AT1G23460.1 | Thale cress | extracellular | 35.53 | 30.43 |
| AT3G26610.1 | Thale cress | extracellular | 34.77 | 29.15 |
| Os01t0172900-00 | Rice | nucleus | 21.32 | 28.47 |
| AT1G02460.1 | Thale cress | extracellular | 35.03 | 28.11 |
| AT4G01890.1 | Thale cress | extracellular | 32.23 | 27.19 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 35.79 | 26.5 |
| AT1G60590.1 | Thale cress | extracellular | 36.29 | 26.48 |
| AT1G48100.1 | Thale cress | extracellular | 31.22 | 25.89 |
| GSMUA_Achr4P06370_001 | Banana | extracellular | 41.12 | 21.49 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:829719 | UniProt:A0A178UV87 | ProteinID:AEE86547.1 | ArrayExpress:AT4G35670 |
| EnsemblPlantsGene:AT4G35670 | RefSeq:AT4G35670 | TAIR:AT4G35670 | RefSeq:AT4G35670-TAIR-G | EnsemblPlants:AT4G35670.1 | TAIR:AT4G35670.1 |
| UniProt:F4JN47 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_195292.2 |
| ProteinID:OAO97839.1 | PFAM:PF00295 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009030 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0025022 | ScanProsite:PS00502 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF42 | InterPro:PbH1 |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | UniParc:UPI0000162B9A | SEG:seg |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JN47]
Coordinates
chr4:+:16914599..16917367
Molecular Weight (calculated)
42124.7 Da
IEP (calculated)
5.374
GRAVY (calculated)
-0.109
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTILDISIL INFLCFGIVY GKNYNVLNFD AKGDGQTDDS EAFLQAWTAA CGGDGDIKTL LIPSGKTFLL QPTVFQGPCK SSSIKVQLDG TIVAPSDKFA
101: WSDPISRMWI KFSTVSGLII VGSGTIDSRG SSFWELNLKA SQRPTALHIS KCDNLRINGI TSIDSPKNHI SIKTCNTVAI SNINLFAPET SPNTDGIDIS
201: DSTNINIFDS TIQTGDDCIA INSGSSNINI TGINCGPGHG ISVGSLGAGG AEAKVSDVQV THCTFNQTTN GARIKTWLGG QGYARNISFT DITLVNTKNP
301: IIIDQHYIDK GRLTEESAVA ISNVKFVDFR GTSSNKNAIT LKCSETTHCV DVVMDGIDIT MANGGKPKVN CQYVDGESSD TDLMRDCFKN NTSS
101: WSDPISRMWI KFSTVSGLII VGSGTIDSRG SSFWELNLKA SQRPTALHIS KCDNLRINGI TSIDSPKNHI SIKTCNTVAI SNINLFAPET SPNTDGIDIS
201: DSTNINIFDS TIQTGDDCIA INSGSSNINI TGINCGPGHG ISVGSLGAGG AEAKVSDVQV THCTFNQTTN GARIKTWLGG QGYARNISFT DITLVNTKNP
301: IIIDQHYIDK GRLTEESAVA ISNVKFVDFR GTSSNKNAIT LKCSETTHCV DVVMDGIDIT MANGGKPKVN CQYVDGESSD TDLMRDCFKN NTSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.