Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- golgi 4
- extracellular 6
- vacuole 3
- plasma membrane 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011341.1-P | Field mustard | cytosol | 66.67 | 58.02 |
| CDX75239 | Canola | cytosol | 66.37 | 55.91 |
| CDX68839 | Canola | cytosol | 66.37 | 55.91 |
| AT4G32380.1 | Thale cress | extracellular | 52.05 | 39.29 |
| AT5G44830.1 | Thale cress | extracellular | 35.09 | 36.14 |
| AT4G35670.1 | Thale cress | extracellular | 40.35 | 35.03 |
| AT5G44840.1 | Thale cress | extracellular | 38.6 | 33.76 |
| PGSC0003DMT400056828 | Potato | extracellular | 39.18 | 33.67 |
| AT4G32375.1 | Thale cress | extracellular | 41.52 | 33.57 |
| PGSC0003DMT400008955 | Potato | extracellular | 31.58 | 31.03 |
| AT1G80140.1 | Thale cress | extracellular | 29.82 | 30.36 |
| AT3G15720.1 | Thale cress | extracellular | 40.06 | 30.04 |
| AT5G27530.1 | Thale cress | cytosol | 39.77 | 29.69 |
| TraesCS2A01G405600.1 | Wheat | extracellular | 27.49 | 29.47 |
| AT5G17200.1 | Thale cress | extracellular | 35.67 | 28.98 |
| TraesCS2D01G402300.1 | Wheat | extracellular | 27.78 | 28.53 |
| TraesCS2B01G423400.1 | Wheat | plastid | 29.24 | 28.49 |
| GSMUA_Achr11P... | Banana | extracellular | 34.5 | 28.37 |
| GSMUA_Achr4P13200_001 | Banana | extracellular | 34.5 | 27.96 |
| AT3G57510.1 | Thale cress | extracellular | 34.5 | 27.38 |
| TraesCS2D01G402200.1 | Wheat | extracellular | 30.99 | 27.11 |
| GSMUA_Achr9P22320_001 | Banana | extracellular | 32.46 | 26.88 |
| AT5G39910.1 | Thale cress | extracellular | 29.24 | 26.81 |
| AT2G41850.1 | Thale cress | extracellular | 33.92 | 26.79 |
| HORVU2Hr1G096130.1 | Barley | extracellular | 31.58 | 26.67 |
| TraesCS2D01G402100.1 | Wheat | extracellular | 31.29 | 26.42 |
| AT3G07970.1 | Thale cress | extracellular | 33.63 | 26.2 |
| KXG26899 | Sorghum | extracellular | 32.16 | 26.19 |
| TraesCS2A01G405100.1 | Wheat | extracellular | 31.87 | 26.14 |
| TraesCS2B01G423300.1 | Wheat | extracellular | 30.41 | 25.94 |
| TraesCS2A01G405300.1 | Wheat | extracellular, nucleus | 30.7 | 25.93 |
| TraesCS2D01G402000.1 | Wheat | extracellular | 31.29 | 25.0 |
| TraesCS2B01G423200.1 | Wheat | extracellular | 30.99 | 24.94 |
| AT1G80170.1 | Thale cress | extracellular | 32.16 | 24.77 |
| AT5G14650.1 | Thale cress | extracellular | 30.99 | 24.37 |
| Zm00001d039668_P001 | Maize | plastid | 30.7 | 24.03 |
| AT1G56710.1 | Thale cress | extracellular | 30.12 | 23.73 |
| AT3G26610.1 | Thale cress | extracellular | 32.46 | 23.62 |
| AT1G23460.1 | Thale cress | extracellular | 31.58 | 23.48 |
| AT1G70500.1 | Thale cress | extracellular | 31.58 | 23.08 |
| AT1G48100.1 | Thale cress | extracellular | 30.7 | 22.11 |
| AT4G01890.1 | Thale cress | extracellular | 29.82 | 21.84 |
| AT1G02460.1 | Thale cress | extracellular | 30.99 | 21.59 |
| AT1G60590.1 | Thale cress | extracellular | 30.41 | 19.26 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 29.82 | 19.17 |
| Os01t0172900-00 | Rice | nucleus | 14.04 | 16.27 |
| GSMUA_Achr4P06370_001 | Banana | extracellular | 33.92 | 15.38 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:829371 | ProteinID:AEE86047.1 | ArrayExpress:AT4G32370 | EnsemblPlantsGene:AT4G32370 |
| RefSeq:AT4G32370 | TAIR:AT4G32370 | RefSeq:AT4G32370-TAIR-G | EnsemblPlants:AT4G32370.1 | TAIR:AT4G32370.1 | Unigene:At.54577 |
| UniProt:F4JUA3 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_194963.2 |
| PFAM:PF00295 | ScanProsite:PS00502 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF42 | InterPro:PbH1 | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | UniParc:UPI0000162B68 | : | : |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JUA3]
Coordinates
chr4:+:15625558..15627517
Molecular Weight (calculated)
38136.2 Da
IEP (calculated)
7.259
GRAVY (calculated)
-0.266
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MFNFFFTMKD FKTLFSLIIV ISYYFEYGEG QRILSIKDFI IDTNHTIIDY SQAFQEAWKG LCEDETPNGS ALVIRKNETY TLQPSTFRGP CVSSNIHIQI
101: DGKLEGPRKP IYWKNKENRS WLGFKDVEGL VINGSGVLNP HGEAWWKSVS LSKRPTTISF ASCMDIVYNG LHHINSPRNH ISIYGCTNAT LSNLDISAPE
201: DSPNTDGINI CLSHRIQILD SSIQTGDDCV AITGGRGGSS DINITGVACG PGHGISIGSL GKDNERDDIV ENVNVRSCSF TGTQNGARIK TWNGGRGLAK
301: NILYENITLI DAGYPIIINQ HYFDNKKKHY FDKSFLKVIF KL
101: DGKLEGPRKP IYWKNKENRS WLGFKDVEGL VINGSGVLNP HGEAWWKSVS LSKRPTTISF ASCMDIVYNG LHHINSPRNH ISIYGCTNAT LSNLDISAPE
201: DSPNTDGINI CLSHRIQILD SSIQTGDDCV AITGGRGGSS DINITGVACG PGHGISIGSL GKDNERDDIV ENVNVRSCSF TGTQNGARIK TWNGGRGLAK
301: NILYENITLI DAGYPIIINQ HYFDNKKKHY FDKSFLKVIF KL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.