Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47212 | Canola | extracellular | 88.15 | 88.81 |
| CDY50367 | Canola | extracellular, golgi | 87.78 | 88.43 |
| Bra027148.1-P | Field mustard | extracellular | 87.78 | 88.43 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 76.48 | 77.63 |
| VIT_01s0127g00400.t01 | Wine grape | extracellular, mitochondrion, plastid | 65.93 | 68.73 |
| HORVU3Hr1G031180.1 | Barley | extracellular | 17.59 | 67.38 |
| Os05t0578600-01 | Rice | cytosol, extracellular | 38.89 | 67.31 |
| Solyc05g005170.2.1 | Tomato | nucleus | 61.67 | 65.55 |
| Os01t0637500-00 | Rice | cytosol, extracellular | 40.93 | 65.38 |
| PGSC0003DMT400035162 | Potato | extracellular | 61.48 | 64.97 |
| KRG99364 | Soybean | extracellular, nucleus | 64.44 | 64.68 |
| KRH45648 | Soybean | nucleus | 64.44 | 64.68 |
| GSMUA_Achr6P22080_001 | Banana | extracellular | 57.22 | 63.71 |
| GSMUA_Achr5P09080_001 | Banana | extracellular | 56.85 | 63.04 |
| GSMUA_Achr4P02960_001 | Banana | extracellular | 55.37 | 62.95 |
| AT5G14650.1 | Thale cress | extracellular | 48.15 | 59.77 |
| GSMUA_Achr1P27280_001 | Banana | extracellular | 54.81 | 58.04 |
| HORVU3Hr1G056270.10 | Barley | extracellular | 57.04 | 57.89 |
| TraesCS3A01G225800.2 | Wheat | extracellular | 57.78 | 57.88 |
| TraesCS3D01G223900.1 | Wheat | extracellular | 57.04 | 57.46 |
| TraesCS1A01G418000.1 | Wheat | extracellular | 54.07 | 57.25 |
| TraesCS3B01G258600.2 | Wheat | extracellular | 56.67 | 56.98 |
| EES01142 | Sorghum | extracellular | 55.93 | 56.77 |
| EES20001 | Sorghum | extracellular | 55.74 | 56.05 |
| TraesCS1B01G448100.1 | Wheat | extracellular | 55.0 | 56.04 |
| Zm00001d011444_P002 | Maize | extracellular | 56.11 | 56.01 |
| Zm00001d044110_P001 | Maize | extracellular | 56.11 | 55.9 |
| Os01t0636500-01 | Rice | extracellular | 55.19 | 55.39 |
| TraesCS1D01G425600.1 | Wheat | extracellular | 53.89 | 55.22 |
| HORVU1Hr1G091430.5 | Barley | extracellular | 55.37 | 53.97 |
| Zm00001d009667_P001 | Maize | extracellular, mitochondrion, plastid | 51.3 | 53.68 |
| AT3G26610.1 | Thale cress | extracellular | 40.56 | 46.6 |
| AT1G48100.1 | Thale cress | extracellular | 37.22 | 42.32 |
| AT1G56710.1 | Thale cress | extracellular | 33.7 | 41.94 |
| AT1G02460.1 | Thale cress | extracellular | 36.11 | 39.71 |
| AT4G01890.1 | Thale cress | extracellular | 33.7 | 38.97 |
| AT4G35670.1 | Thale cress | extracellular | 26.48 | 36.29 |
| AT1G80170.1 | Thale cress | extracellular | 29.81 | 36.26 |
| AT1G23460.1 | Thale cress | extracellular | 30.37 | 35.65 |
| AT1G80140.1 | Thale cress | extracellular | 22.04 | 35.42 |
| AT5G44830.1 | Thale cress | extracellular | 21.67 | 35.24 |
| AT5G44840.1 | Thale cress | extracellular | 25.37 | 35.04 |
| AT2G41850.1 | Thale cress | extracellular | 27.78 | 34.64 |
| AT1G70500.1 | Thale cress | extracellular | 30.0 | 34.62 |
| AT3G57510.1 | Thale cress | extracellular | 27.22 | 34.11 |
| AT5G39910.1 | Thale cress | extracellular | 23.15 | 33.51 |
| AT3G07970.1 | Thale cress | extracellular | 26.3 | 32.35 |
| AT5G27530.1 | Thale cress | cytosol | 27.41 | 32.31 |
| AT4G32370.1 | Thale cress | extracellular | 19.26 | 30.41 |
| AT5G17200.1 | Thale cress | extracellular | 23.52 | 30.17 |
| AT3G15720.1 | Thale cress | extracellular | 25.37 | 30.04 |
| AT4G32380.1 | Thale cress | extracellular | 21.48 | 25.61 |
| AT4G32375.1 | Thale cress | extracellular | 17.59 | 22.46 |
Protein Annotations
| MapMan:50.3.2 | EntrezGene:842353 | ProteinID:AAB71972.1 | ProteinID:AEE33700.1 | ArrayExpress:AT1G60590 | EnsemblPlantsGene:AT1G60590 |
| RefSeq:AT1G60590 | TAIR:AT1G60590 | RefSeq:AT1G60590-TAIR-G | EnsemblPlants:AT1G60590.1 | TAIR:AT1G60590.1 | Unigene:At.27368 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | RefSeq:NP_564758.2 | UniProt:O22699 | PFAM:PF00295 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001185 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | ScanProsite:PS00502 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF58 | InterPro:PbH1 | InterPro:Pectin_lyase_fold/virulence |
| SMART:SM00710 | SUPFAM:SSF51126 | TMHMM:TMhelix | UniParc:UPI00000483C0 | SEG:seg | : |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
Coordinates
chr1:-:22314089..22317070
Molecular Weight (calculated)
59634.3 Da
IEP (calculated)
6.914
GRAVY (calculated)
-0.249
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.