Factsheet for TraesCS1A01G418000.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G425600.1	Wheat	extracellular	95.29	92.22
TraesCS1B01G448100.1	Wheat	extracellular	95.1	91.51
HORVU1Hr1G091430.5	Barley	extracellular	94.12	86.64
Os05t0578600-01	Rice	cytosol, extracellular	52.75	86.22
EES20001	Sorghum	extracellular	77.45	73.56
TraesCS3A01G225800.2	Wheat	extracellular	73.73	69.76
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	66.08	65.31
GSMUA_Achr4P02960_001	Banana	extracellular	60.0	64.42
GSMUA_Achr6P22080_001	Banana	extracellular	61.18	64.33
GSMUA_Achr5P09080_001	Banana	extracellular	61.37	64.27
GSMUA_Achr1P27280_001	Banana	extracellular	59.61	59.61
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	59.61	58.69
CDY09873	Canola	extracellular	50.0	58.09
CDX69569	Canola	extracellular	49.8	57.86
Bra008748.1-P	Field mustard	extracellular	49.61	57.63
KRG93260	Soybean	extracellular	50.0	57.56
KRH56581	Soybean	extracellular	49.22	57.18
Solyc05g005170.2.1	Tomato	nucleus	56.86	57.09
PGSC0003DMT400035162	Potato	extracellular	56.67	56.56
AT5G14650.1	Thale cress	extracellular	48.04	56.32
KRH45648	Soybean	nucleus	59.22	56.13
Bra031724.1-P	Field mustard	extracellular	56.67	56.12
VIT_14s0066g01060.t01	Wine grape	extracellular	53.14	56.11
KRG99364	Soybean	extracellular, nucleus	59.02	55.95
CDY37962	Canola	extracellular, golgi, vacuole	58.24	55.83
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	58.04	55.53
CDX93397	Canola	extracellular, golgi, vacuole	58.04	55.53
CDY54228	Canola	extracellular, golgi, vacuole	56.86	54.92
CDY50367	Canola	extracellular, golgi	57.65	54.85
Bra027148.1-P	Field mustard	extracellular	57.65	54.85
CDY20612	Canola	extracellular	56.86	54.61
CDY47212	Canola	extracellular	57.25	54.48
CDY20962	Canola	extracellular, golgi, vacuole	56.67	54.43
AT1G60590.1	Thale cress	extracellular	57.25	54.07
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	56.27	54.05
Solyc07g015870.2.1	Tomato	extracellular	47.45	53.9
AT1G10640.1	Thale cress	extracellular, golgi	55.69	53.38
CDY34877	Canola	extracellular, golgi	51.18	53.37
PGSC0003DMT400077010	Potato	cytosol	47.25	52.05
TraesCS7A01G330000.1	Wheat	extracellular	40.0	41.8
TraesCS1A01G311100.1	Wheat	extracellular	39.41	41.53
TraesCS5A01G459000.1	Wheat	extracellular	31.96	39.85
TraesCS5A01G459100.1	Wheat	extracellular	31.96	39.18
TraesCS7A01G162500.1	Wheat	extracellular	30.98	37.62
TraesCS2A01G405100.1	Wheat	extracellular	30.39	37.17
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	29.22	36.79
TraesCS2A01G405600.1	Wheat	extracellular	22.75	36.36
TraesCS3A01G129400.1	Wheat	extracellular	29.22	36.34
TraesCS1A01G364800.2	Wheat	extracellular	29.02	35.75
TraesCS3A01G129500.1	Wheat	extracellular	28.24	35.38
TraesCS1A01G124300.1	Wheat	extracellular, plastid	29.8	35.1
TraesCS4A01G066700.1	Wheat	extracellular	28.04	33.03
TraesCS1A01G365300.1	Wheat	extracellular	27.06	31.72
TraesCS3A01G024500.1	Wheat	extracellular	27.45	31.67
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	30.98	30.1
TraesCS1A01G365200.1	Wheat	extracellular	26.47	29.41

Protein Annotations

EnsemblPlants:TraesCS1A01G418000.1	EnsemblPlantsGene:TraesCS1A01G418000	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF56	PFAM:PF00295
SEG:seg	SignalP:SignalP-noTM	SMART:SM00710	SUPFAM:SSF51126	MapMan:21.3.5.1.3	:

Description

No Description!

Coordinates

chr1A:-:575594585..575597778

Molecular Weight (calculated)

54386.2 Da

IEP (calculated)

6.655

GRAVY (calculated)

-0.289

Length

510 amino acids

Sequence
(BLAST)

001: MSKGLAVLLL VVSLALSSGV GFCDARSGKH WRQNRGPSTT MFTRKGKGKN GGGSPPHSHR QYGKGHQSPA MPAPPSPGGG NGHASPSPPP PQAPPSPPPE
101: APSQGMVFSV VAFGARGDGV TDDTQAFEAA WAAACKVEAS TVLVPPELEF LVGPISFSGP NCKPNTIFQL DGTISAKIGA RAWGSGLLQW LEFTKLNGIS
201: IQGSGVINGQ GKEWWTYSDS DDDDDDDMDS YTDQELEKMP QIKPTALRFY GSSNVRVTGI SIINSPQCHL KFDSCQGVMV HNLTISSPEN SPNTDGIHLQ
301: NSKDVNIHHT DLACGDDCIS IQTGCSDVNI HNVNCGPGHG ISIGGLGRYN TKACVSNITV RDVNMFKTMT GVRIKTWQGG SGLVQGIRFS NIHMSEVQTP
401: IMIDQFYCDK TSCTNQSSAV AVSGVQYENI RGTFTIKPAQ FACSDSSPCS EITLTGIQLR PLIVPQYHTC SSPFCWEAFG ELYTPTIPPI SCLQLGKPAG
501: NRVLSDHDQC

Best Arabidopsis Sequence Match ( AT1G10640.1 )
(BLAST)

001: MIMRRSLSLR SITMMILMAV LVWSVTLETC IARRGRHWRH SHRSSSDLSD SLSNKKPKSH GNSHHHSSHN NNHHHKSKPK PKPKLKTPPK AHDNNSPVVS
101: GPPKVQPPPL PPQKGSQVFN VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKTWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV
301: GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG IIFSNIQLNQ VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS IELKPVQEKY RMYDAYCWQT
501: FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5U6]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.