Factsheet for TraesCS4A01G066700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G243600.1	Wheat	extracellular	94.92	94.92
TraesCS4B01G244300.1	Wheat	extracellular	94.92	94.92
HORVU0Hr1G038940.1	Barley	cytosol	85.91	92.08
Os03t0216800-01	Rice	extracellular	72.75	71.92
KXG39856	Sorghum	extracellular	69.75	70.23
Zm00001d048079_P001	Maize	extracellular	63.74	59.74
VIT_13s0064g00760.t01	Wine grape	cytosol	38.34	50.0
GSMUA_Achr1P22940_001	Banana	extracellular	49.19	48.3
Bra029690.1-P	Field mustard	cytosol	44.8	47.78
KRH23942	Soybean	extracellular	47.58	46.82
KRH32949	Soybean	extracellular	47.34	46.8
KRH71979	Soybean	extracellular	46.19	46.73
KRH39858	Soybean	extracellular	47.34	46.49
CDY28005	Canola	extracellular	45.03	46.32
CDY35976	Canola	extracellular	45.03	46.32
VIT_08s0007g08330.t01	Wine grape	extracellular	47.11	45.95
KRH13966	Soybean	extracellular	46.19	45.56
CDX74019	Canola	extracellular	45.96	45.54
CDY07963	Canola	extracellular	45.96	45.43
Bra016911.1-P	Field mustard	extracellular	45.27	45.27
TraesCS7A01G162500.1	Wheat	extracellular	43.88	45.24
Solyc04g015530.1.1	Tomato	cytosol	40.88	45.15
Bra001279.1-P	Field mustard	extracellular	45.5	45.08
CDY14791	Canola	extracellular	45.03	45.03
CDY06902	Canola	extracellular	45.03	45.03
VIT_08s0007g07750.t01	Wine grape	extracellular	45.96	45.02
VIT_08s0007g07770.t01	Wine grape	extracellular	45.96	45.02
PGSC0003DMT400017691	Potato	extracellular	36.26	44.73
VIT_08s0007g07760.t01	Wine grape	extracellular	44.8	44.6
TraesCS5A01G459000.1	Wheat	extracellular	42.03	44.5
TraesCS5A01G459100.1	Wheat	extracellular	42.73	44.47
AT3G07970.1	Thale cress	extracellular	45.03	44.42
CDY48768	Canola	extracellular	44.34	44.14
VIT_08s0007g07780.t01	Wine grape	extracellular	44.11	44.01
Bra004655.1-P	Field mustard	extracellular	43.19	43.69
CDX79907	Canola	extracellular	43.88	43.68
AT2G41850.1	Thale cress	extracellular	43.42	43.42
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	44.57	43.08
Solyc01g087280.1.1	Tomato	extracellular	42.03	42.82
VIT_13s0064g00750.t01	Wine grape	cytosol	44.8	42.54
KRH66955	Soybean	extracellular	45.03	42.03
TraesCS1A01G124300.1	Wheat	extracellular, plastid	41.8	41.8
CDX72025	Canola	extracellular	41.57	41.67
Bra007332.1-P	Field mustard	extracellular	41.34	41.44
CDX67693	Canola	extracellular	41.34	41.34
Bra003286.1-P	Field mustard	extracellular	41.34	41.34
KRH33163	Soybean	extracellular, plastid	45.03	40.88
AT3G57510.1	Thale cress	extracellular	40.42	40.6
Solyc10g080210.1.1	Tomato	extracellular	42.73	40.48
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	37.64	40.25
PGSC0003DMT400070039	Potato	cytosol	37.64	39.76
TraesCS2A01G405100.1	Wheat	extracellular	36.95	38.37
TraesCS2A01G405600.1	Wheat	extracellular	27.71	37.62
TraesCS1A01G364800.2	Wheat	extracellular	35.33	36.96
KRG95273	Soybean	extracellular	44.34	36.71
TraesCS3A01G129500.1	Wheat	extracellular	33.26	35.38
TraesCS3A01G129400.1	Wheat	extracellular	32.1	33.9
TraesCS3A01G024500.1	Wheat	extracellular	34.18	33.48
TraesCS7A01G330000.1	Wheat	extracellular	37.64	33.4
TraesCS1A01G365300.1	Wheat	extracellular	32.79	32.64
TraesCS1A01G311100.1	Wheat	extracellular	35.8	32.02
CDY61868	Canola	extracellular	39.95	31.51
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	38.11	31.43
TraesCS1A01G365200.1	Wheat	extracellular	32.79	30.94
TraesCS3A01G225800.2	Wheat	extracellular	36.72	29.5
CDY06100	Canola	extracellular	27.71	28.1
TraesCS1A01G418000.1	Wheat	extracellular	33.03	28.04

Protein Annotations

EnsemblPlants:TraesCS4A01G066700.1	EnsemblPlantsGene:TraesCS4A01G066700	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF95	PFAM:PF00295	ScanProsite:PS00502
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF51126	MapMan:50.3.2	:	:

Description

No Description!

Coordinates

chr4A:-:63825069..63827366

Molecular Weight (calculated)

46388.1 Da

IEP (calculated)

5.391

GRAVY (calculated)

-0.008

Length

433 amino acids

Sequence
(BLAST)

001: MGPRKFLLAS ITTVSVLLYM FPHASSESVA LPPESAYGPA AESPDAGARD LSPVPPPMVF DVDDYGASAG GDATEAFLAA WKDACNSSSD PSLLLVPEGK
101: AYLLMPVSFT GPCRATTITA MIRGTLEAPS NRSVWLDGDR RERWITFEDV DSLHVMGGGT LNGHGQEWWI NSCKVNKSMK CVAGPTALYF RSCDHLVVDD
201: LEVKDSMQMH VVIANCWKAA VSRLFVTAPG WSPNTDGIHV SNSREVSITN CIISTGDDCI SIVSGSEFVW ASGIYCGPGH GISIGSLGAN KSRAHVSDVL
301: VEKATLVGTT NGVRIKTWQG GEGSAERIIF QDIKMYNVTN PIIIDQNYCD SKKPCSEEES AVAISDIRYN NIHGTSSSKV AVKFICSSAV HCDGIVMQDV
401: SLVGQKGAYL KCSSVNARVI TPGFNYPYCT ADM

Best Arabidopsis Sequence Match ( AT1G70500.1 )
(BLAST)

001: MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAL5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.