Factsheet for PGSC0003DMT400017691

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g087280.1.1	Tomato	extracellular	94.59	78.12
VIT_13s0064g00760.t01	Wine grape	cytosol	44.16	46.69
PGSC0003DMT400070039	Potato	cytosol	47.86	40.98
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	45.01	39.8
KRH23942	Soybean	extracellular	49.57	39.55
KRH32949	Soybean	extracellular	49.29	39.5
VIT_13s0064g00750.t01	Wine grape	cytosol	51.28	39.47
Bra029690.1-P	Field mustard	cytosol	45.58	39.41
KRH13966	Soybean	extracellular	49.0	39.18
KRH39858	Soybean	extracellular	49.0	39.0
CDY07963	Canola	extracellular	47.86	38.36
CDX74019	Canola	extracellular	47.29	37.99
Bra001279.1-P	Field mustard	extracellular	47.01	37.76
HORVU0Hr1G038940.1	Barley	cytosol	43.3	37.62
AT3G07970.1	Thale cress	extracellular	47.01	37.59
CDY35976	Canola	extracellular	44.73	37.29
CDY28005	Canola	extracellular	44.44	37.05
TraesCS4D01G243600.1	Wheat	extracellular	45.01	36.49
TraesCS4A01G066700.1	Wheat	extracellular	44.73	36.26
TraesCS4B01G244300.1	Wheat	extracellular	44.44	36.03
GSMUA_Achr1P22940_001	Banana	extracellular	44.73	35.6
KXG39856	Sorghum	extracellular	43.02	35.12
Os03t0216800-01	Rice	extracellular	43.59	34.93
PGSC0003DMT400056828	Potato	extracellular	36.18	31.91
Zm00001d048079_P001	Maize	extracellular	41.6	31.6
PGSC0003DMT400008955	Potato	extracellular	31.05	31.32
PGSC0003DMT400080722	Potato	extracellular	41.03	31.3
PGSC0003DMT400001638	Potato	extracellular, plastid	39.6	30.96
PGSC0003DMT400055713	Potato	extracellular	40.17	30.79
PGSC0003DMT400007095	Potato	cytosol	36.75	29.66
PGSC0003DMT400035101	Potato	extracellular, golgi	38.75	28.27
PGSC0003DMT400075723	Potato	extracellular	39.03	28.19
PGSC0003DMT400013344	Potato	extracellular	36.47	27.12
PGSC0003DMT400035162	Potato	extracellular	39.32	27.01
PGSC0003DMT400077010	Potato	cytosol	34.76	26.35

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009791	GO:GO:0009901	GO:GO:0009908	GO:GO:0009987	GO:GO:0010047
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0030154	GO:GO:0045490	GO:GO:0048235
GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M1A9B2	PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400006862
PGSC:PGSC0003DMG400006862	EnsemblPlants:PGSC0003DMT400017691	PFscan:PS51257	PANTHER:PTHR31375	PANTHER:PTHR31375:SF28	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00029556A9
SEG:seg	:	:	:	:	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400006862]

Coordinates

chr1:-:65662891..65666355

Molecular Weight (calculated)

39311.5 Da

IEP (calculated)

9.558

GRAVY (calculated)

-0.381

Length

351 amino acids

Sequence
(BLAST)

001: MLFRILFIVL LATSLFSTSC NGKKKIGKPI KHGHNAPKNG HVKKRTQAII DIQSFGAKGD GLSDDTEAFI KAWKKTCKTE NGVLLIPRHK IYYIGPIKFH
101: GPCKKGLRMM INGELRASKD ISDYKEDKRH WLLFQNMENF IVEGIGSIDG NGQVWWKSSC KVDKTIPCNT QTLTVPTAMS FYNCTNLKVR NLEFKNPQKM
201: HLTITKSELV EVSRLKITAP ADSPNTDGIH VSGTKDIDIH HSYIETGDDC ISIVNGSTNV RARYIHCGPG HGISIGSLGK NKEEDVVSNI YVHDATLRGT
301: TNGLRIKSWQ GGRGYAKDIL FQNIQMVNVT NPIIIDQFYC DQDKPCKEQV F

Best Arabidopsis Sequence Match ( AT3G07970.1 )
(BLAST)

001: MYEKIIILSV FLLTFLPSCF SSYPFNHRDD LFMSSNVYYE TNRQHQHGHN TRNSHLKNRH GYAPRSSPRS FNVNTFGAKA NGNDDSKAFM KAWEAACSST
101: GIVYIVAPKN RDYMLKAVTF SGPCKSSLII FKIYGRIEAW ENPSDYKERR HWIVFENVNN LRVEGGGRID GNGHIWWPKS CKINPQLPCL GAPTAVTFVE
201: CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS PNTDGIHVSG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS
301: EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV EACPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKNIPC
401: RGISMQNVKL VDQTQQDVSK ASCSNVKLDT RGNVSPLCT

Arabidopsis Description

QRT2Polygalacturonase QRT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.