Factsheet for PGSC0003DMT400077010

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
extracellular 1
plasma membrane 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g015870.2.1	Tomato	extracellular	87.69	90.42
Bra008748.1-P	Field mustard	extracellular	56.16	59.23
CDX69569	Canola	extracellular	56.16	59.23
KRH56581	Soybean	extracellular	55.72	58.77
CDY09873	Canola	extracellular	55.51	58.54
AT5G14650.1	Thale cress	extracellular	54.64	58.16
HORVU3Hr1G031180.1	Barley	extracellular	17.71	58.16
Os05t0578600-01	Rice	cytosol, extracellular	39.09	58.01
KRG93260	Soybean	extracellular	55.29	57.79
Os01t0637500-00	Rice	cytosol, extracellular	41.04	56.21
VIT_14s0066g01060.t01	Wine grape	extracellular	57.67	55.28
GSMUA_Achr4P02960_001	Banana	extracellular	55.29	53.89
GSMUA_Achr5P09080_001	Banana	extracellular	54.21	51.54
PGSC0003DMT400035162	Potato	extracellular	56.59	51.27
GSMUA_Achr6P22080_001	Banana	extracellular	53.35	50.93
GSMUA_Achr1P27280_001	Banana	extracellular	54.86	49.8
TraesCS1A01G418000.1	Wheat	extracellular	52.05	47.25
TraesCS1B01G448100.1	Wheat	extracellular	52.7	46.04
HORVU3Hr1G056270.10	Barley	extracellular	52.7	45.86
TraesCS3A01G225800.2	Wheat	extracellular	53.35	45.83
TraesCS1D01G425600.1	Wheat	extracellular	52.05	45.73
EES20001	Sorghum	extracellular	52.92	45.62
EES01142	Sorghum	extracellular	52.05	45.3
TraesCS3B01G258600.2	Wheat	extracellular	52.48	45.25
TraesCS3D01G223900.1	Wheat	extracellular	52.27	45.15
Os01t0636500-01	Rice	extracellular	51.62	44.42
Zm00001d011444_P002	Maize	extracellular	51.84	44.36
Zm00001d044110_P001	Maize	extracellular	51.84	44.28
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	49.03	43.99
HORVU1Hr1G091430.5	Barley	extracellular	52.05	43.5
PGSC0003DMT400035101	Potato	extracellular, golgi	43.84	42.2
PGSC0003DMT400007095	Potato	cytosol	38.88	41.38
PGSC0003DMT400013344	Potato	extracellular	39.52	38.77
PGSC0003DMT400075723	Potato	extracellular	38.88	37.04
PGSC0003DMT400055713	Potato	extracellular	36.29	36.68
PGSC0003DMT400008955	Potato	extracellular	27.21	36.21
PGSC0003DMT400056828	Potato	extracellular	31.1	36.18
PGSC0003DMT400001638	Potato	extracellular, plastid	34.77	35.86
PGSC0003DMT400080722	Potato	extracellular	34.56	34.78
PGSC0003DMT400017691	Potato	extracellular	26.35	34.76
PGSC0003DMT400070039	Potato	cytosol	27.86	31.46

Protein Annotations

MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	UniProt:M1CXS8	PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400029954
PGSC:PGSC0003DMG400029954	EnsemblPlants:PGSC0003DMT400077010	PANTHER:PTHR31375	PANTHER:PTHR31375:SF34	InterPro:PbH1	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI000294B105	:	:	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400029954]

Coordinates

chr7:-:8520702..8527108

Molecular Weight (calculated)

51005.4 Da

IEP (calculated)

6.770

GRAVY (calculated)

-0.244

Length

463 amino acids

Sequence
(BLAST)

001: MKFHDFKKIS LARQERVLSQ MIHHQQDEKH FFFMHTLENA TCNDRSQESN IENFYVFNVL DYGAKGDGIT FDTKAFEATW IEACKVEGSI MMVPSDYDFL
101: VGPISFSGSH CEKNIVFQLD GRIIAPTNPK VWGVLQWLEF SKLNGICVKG KGIIDGQGSV WWKIAPFLLI EEYEGDYSEE QDDYAPKIAL ISSTSKGKMP
201: RTRPAALKFY GSSNVVVTGI TIQNSPKAHL KFDNCVAVQV SGITVSSPGD SPNTDGIHLQ NSQNVVINSS HIACGDDCIS IQTGSSAVFI HDVHCGPGHG
301: FSIGGLGKDN TKACVSNITV QDSTLQNTMT GVRIKTWQGG SGSVQGIMFS NIHVSDVKIP IMIDQFYCDK RKCGNRTSAV AISGVSYQSI KGTYSYKPVH
401: FACSDSVPCT GVSLADIELK PSSEKKHFYG PYCWETYGEL RTNTTPPIDC IQPNKRIPSY DSC

Best Arabidopsis Sequence Match ( AT1G60590.1 )
(BLAST)

001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.