Factsheet for Zm00001d011444_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01142	Sorghum	extracellular	94.64	96.24
Zm00001d044110_P001	Maize	extracellular	92.05	91.88
Os01t0637500-00	Rice	cytosol, extracellular	56.75	90.83
HORVU3Hr1G031180.1	Barley	extracellular	23.29	89.36
Os01t0636500-01	Rice	extracellular	85.21	85.69
TraesCS3D01G223900.1	Wheat	extracellular	82.26	83.02
TraesCS3A01G225800.2	Wheat	extracellular	82.44	82.75
HORVU3Hr1G056270.10	Barley	extracellular	81.15	82.52
TraesCS3B01G258600.2	Wheat	extracellular	81.52	82.12
GSMUA_Achr6P22080_001	Banana	extracellular	61.0	68.04
GSMUA_Achr5P09080_001	Banana	extracellular	59.33	65.91
GSMUA_Achr4P02960_001	Banana	extracellular	57.12	65.05
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	60.81	63.76
GSMUA_Achr1P27280_001	Banana	extracellular	58.04	61.57
KRG99364	Soybean	extracellular, nucleus	59.33	59.67
AT5G14650.1	Thale cress	extracellular	47.87	59.54
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	56.93	59.46
KRH45648	Soybean	nucleus	58.78	59.11
Bra008748.1-P	Field mustard	extracellular	47.69	58.77
CDX69569	Canola	extracellular	47.69	58.77
Bra031724.1-P	Field mustard	extracellular	55.82	58.64
CDY09873	Canola	extracellular	47.5	58.54
CDY37962	Canola	extracellular, golgi, vacuole	56.93	57.89
KRG93260	Soybean	extracellular	47.32	57.79
CDX93397	Canola	extracellular, golgi, vacuole	56.75	57.6
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	56.75	57.6
CDY54228	Canola	extracellular, golgi, vacuole	56.19	57.58
KRH56581	Soybean	extracellular	46.4	57.18
CDY20612	Canola	extracellular	56.01	57.06
PGSC0003DMT400035162	Potato	extracellular	53.6	56.75
Solyc05g005170.2.1	Tomato	nucleus	53.23	56.69
CDY20962	Canola	extracellular, golgi, vacuole	55.64	56.69
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	55.64	56.69
CDY50367	Canola	extracellular, golgi	56.01	56.53
CDY47212	Canola	extracellular	56.01	56.53
CDY34877	Canola	extracellular, golgi	50.83	56.24
AT1G60590.1	Thale cress	extracellular	56.01	56.11
VIT_14s0066g01060.t01	Wine grape	extracellular	50.09	56.11
AT1G10640.1	Thale cress	extracellular, golgi	55.08	56.02
Bra027148.1-P	Field mustard	extracellular	55.45	55.97
Solyc07g015870.2.1	Tomato	extracellular	44.36	53.45
PGSC0003DMT400077010	Potato	cytosol	44.36	51.84
Zm00001d045974_P001	Maize	extracellular	39.0	50.36
Zm00001d011156_P001	Maize	plastid	35.12	43.58
Zm00001d009057_P001	Maize	extracellular	31.98	40.9
Zm00001d040589_P001	Maize	extracellular	36.23	39.28
Zm00001d034551_P001	Maize	extracellular	29.57	36.7
Zm00001d040725_P002	Maize	extracellular, vacuole	34.01	36.65
Zm00001d034552_P001	Maize	extracellular	29.57	36.28
Zm00001d038874_P002	Maize	extracellular	27.54	36.16
Zm00001d015129_P001	Maize	mitochondrion	31.79	33.33
Zm00001d048079_P001	Maize	extracellular	28.1	32.9
Zm00001d034559_P001	Maize	extracellular	28.84	32.84
Zm00001d039668_P001	Maize	plastid	25.88	32.04
Zm00001d038875_P001	Maize	extracellular	27.17	31.21
Zm00001d013032_P001	Maize	extracellular	27.73	30.8
Zm00001d009167_P001	Maize	extracellular	35.86	25.33

Protein Annotations

EntrezGene:100282388	Gene3D:2.160.20.10	MapMan:21.3.5.1.3	ProteinID:AQK96920.1	EMBL:BT068825	UniProt:C0PKK6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798
GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF56
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI000195D2D4	EnsemblPlantsGene:Zm00001d011444	EnsemblPlants:Zm00001d011444_P002	EnsemblPlants:Zm00001d011444_T002	SEG:seg

Description

Polygalacturonase QRT2

Coordinates

chr8:+:150552452..150556595

Molecular Weight (calculated)

58091.8 Da

IEP (calculated)

7.837

GRAVY (calculated)

-0.322

Length

541 amino acids

Sequence
(BLAST)

001: MKLRAKGIGL LLLLVLLALC STIEVGEARR GKHWRSSRSS PGSSQLKKGK GKKSSSHRQY GANRPGPKPP VSSTPSSGAG KGNHQNPYQP SPSPSPNAPD
101: IPPMPSPANG SRHSTPEPPA PSCGKGQQQP SQPPPATSQG AVFNVVDFGA KGDGVTDDTK AFEGAWAAAC KKGACTVLVP PELEFLVGPI SFSGPYCKSN
201: IVFQLEGTIL APTSAKSWGS GLLQWLEFTK LNGMVIQGNG IINGRGQQWW TYSDTEDEDD DDTYDVEFER MPQIKPTALR FYGSFNVVVA GITIVNSSQC
301: HLKFDNCQGV MVHDLTISSP ENSLNTDGIH LQNSKDVSIH HTNLACGDDC ISIQTGCSNI NIHNVNCGPG HGISIGGLGR DNTKACVSNV TVRDVNMFRT
401: MNGVRIKTWQ GGVGLVQDIR FSNIQVSEVQ TPIIIDQFYC DRSTCRNQTS AVAVSGVQYE NIRGTFTIKP VHFACSDSLP CSGISLTGVQ LRPVQVPHYH
501: LNNPFCWQAF GELYTPTVPP IACLQIGKPA GNNLQSYDDI C

Best Arabidopsis Sequence Match ( AT1G60590.1 )
(BLAST)

001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.