Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os05t0578600-01 | Rice | cytosol, extracellular | 48.45 | 80.13 |
| EES20001 | Sorghum | extracellular | 73.64 | 70.76 |
| TraesCS1A01G418000.1 | Wheat | extracellular | 65.31 | 66.08 |
| TraesCS1B01G448100.1 | Wheat | extracellular | 66.67 | 64.91 |
| TraesCS1D01G425600.1 | Wheat | extracellular | 65.5 | 64.14 |
| HORVU1Hr1G091430.5 | Barley | extracellular | 67.05 | 62.45 |
| Zm00001d011444_P002 | Maize | extracellular | 63.76 | 60.81 |
| Zm00001d044110_P001 | Maize | extracellular | 63.76 | 60.7 |
| GSMUA_Achr5P09080_001 | Banana | extracellular | 56.01 | 59.34 |
| GSMUA_Achr6P22080_001 | Banana | extracellular | 55.43 | 58.97 |
| GSMUA_Achr4P02960_001 | Banana | extracellular | 54.26 | 58.95 |
| KRG93260 | Soybean | extracellular | 48.45 | 56.43 |
| CDX69569 | Canola | extracellular | 46.9 | 55.13 |
| KRH56581 | Soybean | extracellular | 46.9 | 55.13 |
| Bra008748.1-P | Field mustard | extracellular | 46.71 | 54.9 |
| AT5G14650.1 | Thale cress | extracellular | 46.12 | 54.71 |
| GSMUA_Achr1P27280_001 | Banana | extracellular | 53.88 | 54.51 |
| CDY09873 | Canola | extracellular | 46.32 | 54.44 |
| VIT_01s0127g00400.t01 | Wine grape | extracellular, mitochondrion, plastid | 54.46 | 54.25 |
| Bra031724.1-P | Field mustard | extracellular | 53.88 | 53.98 |
| CDY54228 | Canola | extracellular, golgi, vacuole | 54.26 | 53.03 |
| CDY37962 | Canola | extracellular, golgi, vacuole | 54.65 | 53.01 |
| CDX93397 | Canola | extracellular, golgi, vacuole | 54.65 | 52.91 |
| Bra019912.1-P | Field mustard | extracellular, golgi, vacuole | 54.65 | 52.91 |
| VIT_14s0066g01060.t01 | Wine grape | extracellular | 49.42 | 52.8 |
| Solyc05g005170.2.1 | Tomato | nucleus | 51.55 | 52.36 |
| KRH45648 | Soybean | nucleus | 54.46 | 52.23 |
| PGSC0003DMT400035162 | Potato | extracellular | 51.55 | 52.05 |
| CDY50367 | Canola | extracellular, golgi | 54.07 | 52.05 |
| CDY47212 | Canola | extracellular | 54.07 | 52.05 |
| Bra018429.1-P | Field mustard | extracellular, golgi, vacuole | 53.49 | 51.98 |
| CDY20962 | Canola | extracellular, golgi, vacuole | 53.49 | 51.98 |
| CDY20612 | Canola | extracellular | 53.49 | 51.98 |
| Bra027148.1-P | Field mustard | extracellular | 53.49 | 51.49 |
| AT1G60590.1 | Thale cress | extracellular | 53.68 | 51.3 |
| KRG99364 | Soybean | extracellular, nucleus | 53.29 | 51.12 |
| Zm00001d045974_P001 | Maize | extracellular | 41.47 | 51.07 |
| Solyc07g015870.2.1 | Tomato | extracellular | 44.38 | 51.0 |
| CDY34877 | Canola | extracellular, golgi | 48.26 | 50.92 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 52.33 | 50.75 |
| PGSC0003DMT400077010 | Potato | cytosol | 43.99 | 49.03 |
| Zm00001d011156_P001 | Maize | plastid | 35.27 | 41.74 |
| Zm00001d009057_P001 | Maize | extracellular | 32.75 | 39.95 |
| Zm00001d040725_P002 | Maize | extracellular, vacuole | 36.24 | 37.25 |
| Zm00001d040589_P001 | Maize | extracellular | 35.66 | 36.87 |
| Zm00001d038874_P002 | Maize | extracellular | 28.68 | 35.92 |
| Zm00001d034551_P001 | Maize | extracellular | 29.46 | 34.86 |
| Zm00001d034552_P001 | Maize | extracellular | 29.65 | 34.69 |
| Zm00001d015129_P001 | Maize | mitochondrion | 31.98 | 31.98 |
| Zm00001d034559_P001 | Maize | extracellular | 29.07 | 31.58 |
| Zm00001d048079_P001 | Maize | extracellular | 27.91 | 31.17 |
| Zm00001d039668_P001 | Maize | plastid | 26.36 | 31.12 |
| Zm00001d013032_P001 | Maize | extracellular | 29.07 | 30.8 |
| Zm00001d038875_P001 | Maize | extracellular | 26.55 | 29.09 |
| Zm00001d009167_P001 | Maize | extracellular | 36.43 | 24.54 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | UniProt:A0A1D6FL13 | ProteinID:AQK92387.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0071555 | InterPro:Glyco_hydro_28 |
| InterPro:IPR012334 | PFAM:PF00295 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF56 | InterPro:PbH1 | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | UniParc:UPI000844414B | EnsemblPlantsGene:Zm00001d009667 | EnsemblPlants:Zm00001d009667_P001 |
| EnsemblPlants:Zm00001d009667_T001 | SEG:seg | : | : | : | : |
Description
Polygalacturonase QRT2
Coordinates
chr8:-:75122095..75124917
Molecular Weight (calculated)
54744.9 Da
IEP (calculated)
7.203
GRAVY (calculated)
-0.076
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQVKLLSSR VSLPLFKHPL SFPPQAQKPC PSLFCSSSFS VMLRLKALTF LLLLLLLALC SGVHLCDARS GTRWSRTTRG GGSGAAPSAS AAAIGRKGKA
101: RSSGSSHRQS GEGSRSPTDG DPVQGDGSQA PPPQDTTVFS VVEFGAKGDG VTDDTQAFEA AWAAACKVEA STVLVPSGLE FVVGPISFSG PYCKPNILFQ
201: WLEFTKLTGI AVQGSGVING RGQDWWTYAD PNDADDESVE MLLPRTKPTA LRFYGSSNVT VAGITIVNSS QCHLKFDSCE GVMVHDLSVS SPEDSPNTDG
301: IHLQNSRGVD IHHATLACGD DCISIQTGCS DVNIHSVNCG PGHGISIGGL GRFNTKACVS NVTVRDVKMF RTTTGVRIKT WQGGSGLVQG VRFSNIQVTE
401: VQTPIMIDQF YCDRATCRNQ TSAVAVSGVQ YEDVRGTFTV RPAHLACSDS SPCSGITLAG IQLQPLPLPQ HRRLSYDPFC WQAFGELYTP TVPPIPCLQI
501: GRPAAGNSVL SDGDLC
101: RSSGSSHRQS GEGSRSPTDG DPVQGDGSQA PPPQDTTVFS VVEFGAKGDG VTDDTQAFEA AWAAACKVEA STVLVPSGLE FVVGPISFSG PYCKPNILFQ
201: WLEFTKLTGI AVQGSGVING RGQDWWTYAD PNDADDESVE MLLPRTKPTA LRFYGSSNVT VAGITIVNSS QCHLKFDSCE GVMVHDLSVS SPEDSPNTDG
301: IHLQNSRGVD IHHATLACGD DCISIQTGCS DVNIHSVNCG PGHGISIGGL GRFNTKACVS NVTVRDVKMF RTTTGVRIKT WQGGSGLVQG VRFSNIQVTE
401: VQTPIMIDQF YCDRATCRNQ TSAVAVSGVQ YEDVRGTFTV RPAHLACSDS SPCSGITLAG IQLQPLPLPQ HRRLSYDPFC WQAFGELYTP TVPPIPCLQI
501: GRPAAGNSVL SDGDLC
001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.