Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90681 | Sorghum | extracellular | 77.47 | 78.8 |
| Zm00001d034552_P001 | Maize | extracellular | 68.21 | 73.47 |
| Zm00001d034551_P001 | Maize | extracellular | 66.11 | 72.02 |
| TraesCS5D01G470100.1 | Wheat | extracellular | 57.47 | 66.59 |
| TraesCS5B01G468700.1 | Wheat | extracellular | 57.05 | 66.1 |
| Zm00001d013032_P001 | Maize | extracellular | 67.37 | 65.71 |
| TraesCS5A01G459000.1 | Wheat | extracellular | 56.0 | 65.04 |
| TraesCS5B01G469000.1 | Wheat | extracellular | 55.58 | 65.02 |
| TraesCS5B01G468900.1 | Wheat | extracellular | 57.05 | 64.68 |
| TraesCS5A01G459100.1 | Wheat | extracellular | 56.42 | 64.42 |
| TraesCS5D01G470200.1 | Wheat | extracellular | 56.63 | 64.2 |
| HORVU5Hr1G109970.1 | Barley | extracellular | 54.95 | 62.89 |
| HORVU5Hr1G109980.2 | Barley | extracellular, plastid | 55.37 | 58.57 |
| Os03t0808000-00 | Rice | extracellular | 55.79 | 57.36 |
| Zm00001d038874_P002 | Maize | extracellular | 34.95 | 40.29 |
| Zm00001d048079_P001 | Maize | extracellular | 37.89 | 38.96 |
| Zm00001d039668_P001 | Maize | plastid | 32.84 | 35.7 |
| Zm00001d015129_P001 | Maize | mitochondrion | 37.47 | 34.5 |
| Zm00001d009057_P001 | Maize | extracellular | 29.05 | 32.62 |
| Zm00001d040589_P001 | Maize | extracellular | 33.89 | 32.26 |
| Zm00001d011156_P001 | Maize | plastid | 29.47 | 32.11 |
| Zm00001d045974_P001 | Maize | extracellular | 28.21 | 31.98 |
| Zm00001d038875_P001 | Maize | extracellular | 30.74 | 31.0 |
| Zm00001d040725_P002 | Maize | extracellular, vacuole | 32.42 | 30.68 |
| Zm00001d044110_P001 | Maize | extracellular | 33.26 | 29.15 |
| Zm00001d009667_P001 | Maize | extracellular, mitochondrion, plastid | 31.58 | 29.07 |
| Zm00001d011444_P002 | Maize | extracellular | 32.84 | 28.84 |
| Zm00001d009167_P001 | Maize | extracellular | 32.0 | 19.84 |
Protein Annotations
| EntrezGene:103644219 | Gene3D:2.160.20.10 | MapMan:21.3.5.1.1 | UniProt:A0A1D6L8S3 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0071555 | InterPro:Glyco_hydro_28 |
| InterPro:IPR012334 | ProteinID:ONM10608.1 | PFAM:PF00295 | ScanProsite:PS00502 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF98 |
| InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| UniParc:UPI0002213E7D | EnsemblPlantsGene:Zm00001d034559 | EnsemblPlants:Zm00001d034559_P001 | EnsemblPlants:Zm00001d034559_T001 | SEG:seg | : |
Description
Polygalacturonase QRT2
Coordinates
chr1:+:296317213..296319077
Molecular Weight (calculated)
51212.0 Da
IEP (calculated)
8.731
GRAVY (calculated)
-0.238
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSMKPTML ASTAALPLLA LLLLLLHLSS GALEAVVVSA SNGTAADGAS YTCSGSLTWP SSSHQSVFSL DRYGARGDGR HDDTGALARA WEAACASPRP
101: AVLLVPGGRR YLLKLVVLRG PCRSRVAVTV KGTLVASPNR ADWSDSDRRH WIVFRSVDRL TVHGRGSIDG NGHSWWPHSC KINKALPCKA APTALSFHYC
201: TNLRVENLKM MNSQQIHMSI EDCASVQVSR LSITAPGTSP NTDGIHITRS KDVRVTNCKI KTGDDCMSIE DGTHGLHVSG VVCGPGHGIS VGSLGDDDSR
301: AEVSGITIDS VQLHGTTNGA RIKTYQGGSG YARDITFQNM AMHGVRNPIV IDQSYCDRAE AEPPCREQRS AVQISDVVFR NIRGTTVTRD AIRMSCSRDV
401: PCRGIVLQNI DLKMQGGKGH AESTCQNAKW RKSGKVVPQP CTSKEEGKVG QLLEFLLDHE LASSLRSWSS WSLWN
101: AVLLVPGGRR YLLKLVVLRG PCRSRVAVTV KGTLVASPNR ADWSDSDRRH WIVFRSVDRL TVHGRGSIDG NGHSWWPHSC KINKALPCKA APTALSFHYC
201: TNLRVENLKM MNSQQIHMSI EDCASVQVSR LSITAPGTSP NTDGIHITRS KDVRVTNCKI KTGDDCMSIE DGTHGLHVSG VVCGPGHGIS VGSLGDDDSR
301: AEVSGITIDS VQLHGTTNGA RIKTYQGGSG YARDITFQNM AMHGVRNPIV IDQSYCDRAE AEPPCREQRS AVQISDVVFR NIRGTTVTRD AIRMSCSRDV
401: PCRGIVLQNI DLKMQGGKGH AESTCQNAKW RKSGKVVPQP CTSKEEGKVG QLLEFLLDHE LASSLRSWSS WSLWN
001: MARCCRHLAV FLCVLLMLSL CKALSSNVDD GYGHEDGSFE SDSLLKLNND DVLSLISSDE TTLEASTVSV SNFGAKGDGK TDDTQAFKKA WKKACSTNGV
101: TTFLVPKGKT YLLKSTRFRG PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKTWWQNSC KIDKSKPCTK APTALTLYNL
201: KNLNVKNLRV KNAQQIQISI EKCNKVEVSN VEITAPGDSP NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK
301: AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQDYCDKDK CEDQESAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG
401: IVLENVKIKG GTASCKNANV KNQGTVSPKC S
101: TTFLVPKGKT YLLKSTRFRG PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKTWWQNSC KIDKSKPCTK APTALTLYNL
201: KNLNVKNLRV KNAQQIQISI EKCNKVEVSN VEITAPGDSP NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK
301: AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQDYCDKDK CEDQESAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG
401: IVLENVKIKG GTASCKNANV KNQGTVSPKC S
Arabidopsis Description
ADPG1Polygalacturonase ADPG1 [Source:UniProtKB/Swiss-Prot;Acc:O23147]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.