Factsheet for Zm00001d040589_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009057_P001	Maize	extracellular	77.76	91.73
EES00620	Sorghum	extracellular	92.99	91.7
Os01t0296200-00	Rice	extracellular	44.09	82.71
HORVU1Hr1G067840.1	Barley	extracellular, plastid	77.96	81.72
TraesCS1B01G322500.1	Wheat	extracellular	78.36	80.79
TraesCS1A01G311100.1	Wheat	extracellular	78.36	80.79
TraesCS1D01G311000.1	Wheat	extracellular	77.35	80.58
GSMUA_Achr11P...	Banana	extracellular	53.31	61.01
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	59.52	59.28
PGSC0003DMT400007095	Potato	cytosol	49.9	57.24
CDY67535	Canola	extracellular	35.27	56.59
KRH69173	Soybean	extracellular	52.71	55.6
KRH31755	Soybean	extracellular	52.71	55.37
PGSC0003DMT400013344	Potato	extracellular	52.3	55.3
VIT_07s0005g02090.t01	Wine grape	extracellular	51.3	55.05
KRG96576	Soybean	extracellular	50.3	54.33
VIT_14s0060g00620.t01	Wine grape	extracellular	50.5	54.31
Solyc01g079130.1.1	Tomato	extracellular	51.3	54.24
Solyc01g100980.2.1	Tomato	extracellular	51.7	54.2
KRH68311	Soybean	extracellular	49.9	53.9
KRG96690	Soybean	extracellular	49.1	53.38
Bra032600.1-P	Field mustard	extracellular	51.9	52.75
AT1G02460.1	Thale cress	extracellular	51.9	52.75
CDX77909	Canola	extracellular	51.5	52.34
CDX89966	Canola	extracellular	51.3	52.14
GSMUA_Achr3P08400_001	Banana	extracellular	58.52	51.96
CDY15246	Canola	extracellular	51.1	51.93
Bra033328.1-P	Field mustard	extracellular	51.1	51.93
AT4G01890.1	Thale cress	extracellular	47.29	50.54
Bra000911.1-P	Field mustard	extracellular, vacuole	48.9	50.21
Zm00001d040725_P002	Maize	extracellular, vacuole	45.49	45.22
CDY71357	Canola	extracellular, vacuole	28.46	44.8
Zm00001d045974_P001	Maize	extracellular	34.27	40.81
Zm00001d038874_P002	Maize	extracellular	32.46	39.32
Zm00001d011156_P001	Maize	plastid	34.27	39.22
Zm00001d034551_P001	Maize	extracellular	32.46	37.16
Zm00001d034552_P001	Maize	extracellular	32.46	36.73
Zm00001d011444_P002	Maize	extracellular	39.28	36.23
Zm00001d044110_P001	Maize	extracellular	39.08	35.98
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	36.87	35.66
Zm00001d015129_P001	Maize	mitochondrion	35.07	33.91
Zm00001d034559_P001	Maize	extracellular	32.26	33.89
Zm00001d013032_P001	Maize	extracellular	32.87	33.68
Zm00001d048079_P001	Maize	extracellular	30.66	33.12
Zm00001d009167_P001	Maize	extracellular	49.9	32.51
Zm00001d039668_P001	Maize	plastid	28.46	32.49
Zm00001d038875_P001	Maize	extracellular	27.25	28.87

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1D6MRK6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334
ProteinID:ONM31613.1	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF99	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI000221C0EC	EnsemblPlantsGene:Zm00001d040589
EnsemblPlants:Zm00001d040589_P001	EnsemblPlants:Zm00001d040589_T001	SEG:seg	:	:	:

Description

Polygalacturonase

Coordinates

chr3:+:51740462..51742521

Molecular Weight (calculated)

51606.5 Da

IEP (calculated)

6.903

GRAVY (calculated)

-0.116

Length

499 amino acids

Sequence
(BLAST)

001: MEFTARTAIA LLLSLAVSSS FLCGSVQGGR HHHHGKHAKH SSAHPPSAHA PGPASGRRHA RPVSPPAPPP SSGSGGYPTP GGAAPEPAPA PAAAAAGGTV
101: YDVVKDFGAV GDGVTDDTGA IKTAWDTACQ DDGASVVLAA AGYSFLVHTT VFTGPCQGSV TIQLDGTIVA PSDPDMWPAN SKRNWLLFYQ AHGMSLRGAG
201: LIDGKGQKWW DLPCKSHKGQ GGSSGHGASC DSPVALRFFM TNNVTVQGLK VQNSPEFHIR FDSCRGVVAS GLSISSPALS PNTDGIHVEN TQDVLITNTA
301: VSNGDDCVSI GAGTLNMHVE NVTCGPGGHG ISIGSLGKQG SRACVANVTV RNAVIRHSDN GVRIKTWQGG SGAVSSVSFQ NVRMDAVRNP IIIDQYYCLS
401: KSCENATSAV FVSGVSYAGI RGTYDPRTPP IHFGCSDAVP CTNITLSDVE LLPASGETID DPFCWNVYGS TATPTVPPVP CLIEGVPRNL DDNSSLKCY

Best Arabidopsis Sequence Match ( AT1G02460.1 )
(BLAST)

001: MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S

Arabidopsis Description

At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.