Factsheet for PGSC0003DMT400013344

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079130.1.1	Tomato	extracellular	97.25	97.25
VIT_07s0005g02090.t01	Wine grape	extracellular	69.28	70.32
KRG96576	Soybean	extracellular	66.74	68.18
CDY67535	Canola	extracellular	44.92	68.17
KRH69173	Soybean	extracellular	67.8	67.65
KRH31755	Soybean	extracellular	67.8	67.37
KRH68311	Soybean	extracellular	65.68	67.1
PGSC0003DMT400007095	Potato	cytosol	61.65	66.9
AT1G02460.1	Thale cress	extracellular	67.16	64.56
Bra032600.1-P	Field mustard	extracellular	66.95	64.36
CDX89966	Canola	extracellular	66.74	64.15
CDX77909	Canola	extracellular	66.53	63.95
Bra033328.1-P	Field mustard	extracellular	66.53	63.95
CDY15246	Canola	extracellular	66.31	63.75
Os01t0296200-00	Rice	extracellular	34.96	62.03
GSMUA_Achr11P...	Banana	extracellular	55.93	60.55
AT4G01890.1	Thale cress	extracellular	59.11	59.74
Bra000911.1-P	Field mustard	extracellular, vacuole	59.32	57.61
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	59.11	55.69
PGSC0003DMT400075723	Potato	extracellular	57.2	55.56
HORVU1Hr1G067840.1	Barley	extracellular, plastid	55.3	54.83
TraesCS1B01G322500.1	Wheat	extracellular	55.08	53.72
TraesCS1A01G311100.1	Wheat	extracellular	55.08	53.72
TraesCS1D01G311000.1	Wheat	extracellular	54.45	53.65
CDY71357	Canola	extracellular, vacuole	35.17	52.37
Zm00001d040589_P001	Maize	extracellular	55.3	52.3
EES00620	Sorghum	extracellular	55.08	51.38
Zm00001d009057_P001	Maize	extracellular	45.97	51.3
GSMUA_Achr3P08400_001	Banana	extracellular	58.9	49.47
PGSC0003DMT400035162	Potato	extracellular	44.49	41.1
PGSC0003DMT400001638	Potato	extracellular, plastid	37.92	39.87
PGSC0003DMT400077010	Potato	cytosol	38.77	39.52
PGSC0003DMT400056828	Potato	extracellular	32.84	38.94
PGSC0003DMT400008955	Potato	extracellular	28.39	38.51
PGSC0003DMT400035101	Potato	extracellular, golgi	37.71	37.01
PGSC0003DMT400017691	Potato	extracellular	27.12	36.47
PGSC0003DMT400080722	Potato	extracellular	35.38	36.3
PGSC0003DMT400055713	Potato	extracellular	34.75	35.81
PGSC0003DMT400070039	Potato	cytosol	29.45	33.9

Protein Annotations

EntrezGene:102592579	Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334
UniProt:M1A2P5	PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400005204	PGSC:PGSC0003DMG400005204	EnsemblPlants:PGSC0003DMT400013344	PANTHER:PTHR31375
PANTHER:PTHR31375:SF43	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295457F	RefSeq:XP_006349249.1	SEG:seg	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400005204]

Coordinates

chr1:-:63098856..63101852

Molecular Weight (calculated)

51433.7 Da

IEP (calculated)

6.184

GRAVY (calculated)

-0.176

Length

472 amino acids

Sequence
(BLAST)

001: MASLSSTLLV TFYLTFTLLL LLLCSHVVTA RYHHHGHRGH HNNKKQHKHN SHISYPPSIS PEPSPSAGDE GVYDVRSFGA VGDGVTDDTE GFKAAWDAAC
101: QVDSAVIHVP VGYSFMIQST IFTGPCQSGL VFQLEGTIMP PDGPESWGSN KSKRQWLVFY RVNELSLQGG GVIDGRGQEW WNLPCKPHKG PNGSTLPGPC
201: DSPIAIRFFM SSNLTVQGIK MKNSPQFNFR FDNCKNVHIE SLHITAPIWS PNTDGIHIEQ TSNVEIYDSL ISNGDDCVSI GAGCYDVDIR NLTCGPGGHG
301: ISIGSLGNHN SRACVSNITV RDSVIKQSDN GVRIKTWQGG FGAVSGVSFL NIHMDNVRNP IIIDQFYCLS KDCSNRTSAV SVSDIEYSSI KGTYDIRSPP
401: MHFACSDTIP CTNITLSDIE LLPAKGELVL DPFCWNVYGG QETLTIPPIF CLLEGNPPSV FENNDLGYCS SS

Best Arabidopsis Sequence Match ( AT1G02460.1 )
(BLAST)

001: MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S

Arabidopsis Description

At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.