Factsheet for GSMUA_Achr11P04870_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0296200-00	Rice	extracellular	42.2	69.17
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	75.0	65.27
PGSC0003DMT400007095	Potato	cytosol	61.47	61.61
CDY67535	Canola	extracellular	43.12	60.45
GSMUA_Achr3P08400_001	Banana	extracellular	77.75	60.32
VIT_14s0060g00620.t01	Wine grape	extracellular	62.84	59.05
KRH69173	Soybean	extracellular	63.76	58.77
VIT_07s0005g02090.t01	Wine grape	extracellular	62.61	58.71
KRG96576	Soybean	extracellular	61.93	58.44
KRH31755	Soybean	extracellular	63.53	58.32
KRH68311	Soybean	extracellular	61.01	57.58
KRG96690	Soybean	extracellular	59.63	56.64
Solyc01g100980.2.1	Tomato	extracellular	61.7	56.51
HORVU1Hr1G067840.1	Barley	extracellular, plastid	61.47	56.3
TraesCS1D01G311000.1	Wheat	extracellular	61.7	56.16
PGSC0003DMT400013344	Potato	extracellular	60.55	55.93
Solyc01g079130.1.1	Tomato	extracellular	60.32	55.72
TraesCS1B01G322500.1	Wheat	extracellular	61.7	55.58
TraesCS1A01G311100.1	Wheat	extracellular	61.47	55.37
GSMUA_Achr8P06220_001	Banana	extracellular	58.03	54.06
AT1G02460.1	Thale cress	extracellular	60.55	53.77
CDY15246	Canola	extracellular	60.09	53.36
CDX89966	Canola	extracellular	60.09	53.36
Zm00001d040589_P001	Maize	extracellular	61.01	53.31
Bra033328.1-P	Field mustard	extracellular	59.86	53.16
Bra032600.1-P	Field mustard	extracellular	59.86	53.16
CDX77909	Canola	extracellular	59.17	52.55
Zm00001d009057_P001	Maize	extracellular	50.92	52.48
EES00620	Sorghum	extracellular	60.78	52.37
AT4G01890.1	Thale cress	extracellular	55.5	51.82
GSMUA_Achr8P22240_001	Banana	extracellular	55.73	50.94
Bra000911.1-P	Field mustard	extracellular, vacuole	56.42	50.62
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	39.91	45.55
CDY71357	Canola	extracellular, vacuole	33.03	45.43
GSMUA_Achr1P12720_001	Banana	extracellular	38.3	40.73
GSMUA_Achr7P01870_001	Banana	cytosol	39.91	39.55
GSMUA_AchrUn_...	Banana	extracellular	25.92	39.24
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	35.32	38.79
GSMUA_Achr4P02960_001	Banana	extracellular	41.97	38.53
GSMUA_Achr5P09080_001	Banana	extracellular	42.89	38.4
GSMUA_Achr6P22080_001	Banana	extracellular	41.97	37.73
GSMUA_Achr2P14330_001	Banana	extracellular	39.22	37.67
GSMUA_Achr4P22100_001	Banana	extracellular	39.45	37.07
GSMUA_Achr1P27280_001	Banana	extracellular	43.12	36.86
GSMUA_Achr3P13670_001	Banana	extracellular	37.61	36.04
GSMUA_Achr1P22940_001	Banana	extracellular	35.78	35.37
GSMUA_Achr4P13200_001	Banana	extracellular	33.26	34.36
GSMUA_Achr11P...	Banana	extracellular	32.34	33.89
GSMUA_Achr9P22320_001	Banana	extracellular	31.88	33.66
GSMUA_AchrUn_...	Banana	mitochondrion	31.19	33.42
GSMUA_Achr4P06370_001	Banana	extracellular	34.17	19.76

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr11G04870_001	EnsemblPlants:GSMUA_Achr11P04870_001	EnsemblPlants:GSMUA_Achr11T04870_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0RPG7	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF13	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
UniParc:UPI000294848D	SEG:seg	:	:	:	:

Description

Polygalacturonase At1g48100 [Source:GMGC_GENE;Acc:GSMUA_Achr11G04870_001]

Coordinates

chr11:+:3670426..3674269

Molecular Weight (calculated)

47103.6 Da

IEP (calculated)

6.420

GRAVY (calculated)

-0.097

Length

436 amino acids

Sequence
(BLAST)

001: MVFRSPKTSM VLYNLIYPVA FVDAGANANS SNSAVLNVLS FGAVGDGVTD DTEAFKSAWD SACEEGPGVV LVPQGYAFKI SSTIFAGPCH GELTLQELCV
101: KVDGTIMPPD GPDAWPQGTS RRQWLVFYRA NDLTLQGGGL FDGKGAKWWD LPCKPHKGRN HTTLTGPCDS PVAFRFFMSS NLAVHRIRIH NSPQFHFRFD
201: NCRNVTVDAI SINSPALSPN TDGIHVENSV DVGIYNSVIS SGDDCVSIGA GSTNIHIRNL TCGPSHGISI GSLGKQNTRA CVTNVTVKDS VIKHSDNGVR
301: IKTWQGGSGS VSWVSFENIR MDTVRNPIII NQYYCLTKVC KNQTSAVYVS DVSYAGIKGS YDTRSPPIHF GCSDAVPCTN ITLTDVELLP AQGDAIADPF
401: CWNVYGESQT LTIPPVSCLL QGLPRSIMDI DSDRCY

Best Arabidopsis Sequence Match ( AT1G02460.1 )
(BLAST)

001: MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S

Arabidopsis Description

At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.