Factsheet for GSMUA_Achr4P24520_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P14330_001	Banana	extracellular	76.96	64.76
GSMUA_Achr4P02960_001	Banana	extracellular	62.83	50.53
Zm00001d045974_P001	Maize	extracellular	55.24	50.36
GSMUA_Achr6P22080_001	Banana	extracellular	62.57	49.28
GSMUA_Achr5P09080_001	Banana	extracellular	62.04	48.67
GSMUA_Achr1P27280_001	Banana	extracellular	63.09	47.25
GSMUA_Achr1P12720_001	Banana	extracellular	46.07	42.93
GSMUA_Achr11P...	Banana	extracellular	45.55	39.91
GSMUA_Achr7P01870_001	Banana	cytosol	45.29	39.32
GSMUA_Achr8P06220_001	Banana	extracellular	47.91	39.1
GSMUA_AchrUn_...	Banana	extracellular	29.32	38.89
GSMUA_Achr8P22240_001	Banana	extracellular	47.38	37.95
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	39.01	37.53
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	47.64	36.33
GSMUA_Achr11P...	Banana	extracellular	39.01	35.82
GSMUA_AchrUn_...	Banana	mitochondrion	37.96	35.63
GSMUA_Achr4P22100_001	Banana	extracellular	42.41	34.91
GSMUA_Achr4P13200_001	Banana	extracellular	38.22	34.6
GSMUA_Achr3P13670_001	Banana	extracellular	40.58	34.07
GSMUA_Achr9P22320_001	Banana	extracellular	36.39	33.66
GSMUA_Achr1P22940_001	Banana	extracellular	38.22	33.11
GSMUA_Achr3P08400_001	Banana	extracellular	47.91	32.56
GSMUA_Achr4P06370_001	Banana	extracellular	40.05	20.29

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr4G24520_001	EnsemblPlants:GSMUA_Achr4P24520_001	EnsemblPlants:GSMUA_Achr4T24520_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0SRR3	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF58
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI00029683CB
SEG:seg	:	:	:	:	:

Description

Putative Polygalacturonase At1g48100 [Source:GMGC_GENE;Acc:GSMUA_Achr4G24520_001]

Coordinates

chr4:-:24287396..24289053

Molecular Weight (calculated)

40931.6 Da

IEP (calculated)

6.889

GRAVY (calculated)

-0.065

Length

382 amino acids

Sequence
(BLAST)

001: MFIVLDYGAD GDGVTDDTEA FQAAWEAACH GAPSKVIVPS NFEFLVGPIS FSGPCKSNVV FQVDGKIIAP SSGRKAWSSG LLQWLEFRVL KGIRIEGRGI
101: IEGQGSAWWS NSSSLLGSEV SGQLPHVKPT ALRFYGSSDV TVSGITVRNS PQVHLKFDSC QAVEVTGVTI SSPGDSPNTD GIHLQNSVNV FIHNTDLSCG
201: DDCISIQTGC SNILVQNVNC GPGHGISIGG LGKADTQASV SNVTVQNANI VGTMIGVRIK TWQGGSGFVK CIRFAKIKVS NVKTPIVIDQ FYCDHSECKN
301: QTSAVALSDI TYDGIVGTYT VQPVYLACSD SKPCRNIHLS DIQLQLLKQR GRTDDPFCWQ AYGDLQGPIE PPITCLRSKN KR

Best Arabidopsis Sequence Match ( AT1G10640.1 )
(BLAST)

001: MIMRRSLSLR SITMMILMAV LVWSVTLETC IARRGRHWRH SHRSSSDLSD SLSNKKPKSH GNSHHHSSHN NNHHHKSKPK PKPKLKTPPK AHDNNSPVVS
101: GPPKVQPPPL PPQKGSQVFN VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKTWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV
301: GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG IIFSNIQLNQ VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS IELKPVQEKY RMYDAYCWQT
501: FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5U6]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.