Factsheet for GSMUA_Achr8P22240_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0279900-00	Rice	cytosol	49.69	75.24
GSMUA_Achr8P06220_001	Banana	extracellular	72.12	73.5
VIT_05s0020g00420.t01	Wine grape	extracellular	67.71	67.71
TraesCS7A01G330000.1	Wheat	extracellular	65.83	64.34
TraesCS7B01G230600.1	Wheat	extracellular	65.62	64.27
TraesCS7D01G326800.1	Wheat	extracellular	65.41	63.93
HORVU7Hr1G078960.2	Barley	extracellular	65.2	63.6
PGSC0003DMT400075723	Potato	extracellular	63.31	62.14
AT1G48100.1	Thale cress	extracellular	61.84	62.11
Bra018707.1-P	Field mustard	extracellular	61.22	61.86
CDX93644	Canola	extracellular	61.22	61.86
CDY43307	Canola	extracellular	61.22	61.73
Solyc04g008230.2.1	Tomato	nucleus	63.31	61.63
KRH36916	Soybean	extracellular, nucleus	60.59	60.97
KRH11881	Soybean	extracellular	61.22	60.96
KRH42407	Soybean	extracellular	60.38	59.5
KRH58524	Soybean	extracellular	60.59	58.98
GSMUA_Achr11P...	Banana	extracellular	50.94	55.73
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	55.77	53.09
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	37.95	47.38
GSMUA_Achr3P08400_001	Banana	extracellular	54.93	46.62
GSMUA_Achr5P09080_001	Banana	extracellular	42.98	42.09
GSMUA_Achr1P12720_001	Banana	extracellular	35.85	41.71
GSMUA_Achr4P02960_001	Banana	extracellular	41.3	41.47
GSMUA_Achr6P22080_001	Banana	extracellular	41.51	40.82
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	33.12	39.8
GSMUA_Achr2P14330_001	Banana	extracellular	37.53	39.43
GSMUA_Achr1P27280_001	Banana	extracellular	41.3	38.63
GSMUA_AchrUn_...	Banana	extracellular	22.64	37.5
GSMUA_Achr7P01870_001	Banana	cytosol	33.96	36.82
GSMUA_Achr1P22940_001	Banana	extracellular	32.91	35.6
GSMUA_Achr11P...	Banana	extracellular	31.03	35.58
GSMUA_Achr4P22100_001	Banana	extracellular	34.38	35.34
GSMUA_Achr3P13670_001	Banana	extracellular	33.54	35.16
GSMUA_Achr4P13200_001	Banana	extracellular	30.4	34.36
GSMUA_Achr9P22320_001	Banana	extracellular	28.72	33.17
GSMUA_AchrUn_...	Banana	mitochondrion	27.46	32.19
GSMUA_Achr4P06370_001	Banana	extracellular	32.49	20.56

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr8G22240_001	EnsemblPlants:GSMUA_Achr8P22240_001	EnsemblPlants:GSMUA_Achr8T22240_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0TSM7	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF26
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI000295BB18	SEG:seg	:	:	:	:

Description

Polygalacturonase At1g48100 [Source:GMGC_GENE;Acc:GSMUA_Achr8G22240_001]

Coordinates

chr8:-:26892842..26894648

Molecular Weight (calculated)

51458.6 Da

IEP (calculated)

5.214

GRAVY (calculated)

-0.215

Length

477 amino acids

Sequence
(BLAST)

001: MGIPRALLVL CIATAFLSLG PRGSLGRSHL HKRQQSHGRR GNGGHRLQSP VDSPADPPAA GTSTTVTPSN SSSDSSVFDV RSFGAVGDGV TDDTEAFRSA
101: WRAACSVESA TLSVPSDGVF MITSTIFPGP CQPGLVFQVD GVVMPPDGPQ CWPKSDSKHQ WLVFYQLEGM TLRGEGTIEG NGEDWWSLPC KPHRGPHGST
201: LPGSCDSPVL IRFFMSCNLT VRDLRIENSP QFHIKFDACE DVHIEGLSIN SPAFSPNTDG VHIENTRSVT IYNSMISNGD DCISIGPGCS DVDIQNVTCG
301: PGHGIRAWRS IGSLGMHNSE ACVSNVSVKN AVIRNSDNGV RIKTWQGGMG SVSDISFDTV YMENVRNCII IDQYYCSNKG YCQNQSSAVY VSGVTYANIK
401: GTYDVRSPPM HFACSDTLPC TNITMSEVEL LPHEGELVDD PFCWNAYGVM RTVTIPPIPC LQDGQPESLQ EIPNLGC

Best Arabidopsis Sequence Match ( AT1G48100.1 )
(BLAST)

001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC

Arabidopsis Description

Polygalacturonase At1g48100 [Source:UniProtKB/Swiss-Prot;Acc:Q949Z1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.