CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

nucleus 1
extracellular 8
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11881	Soybean	extracellular	97.68	96.66
KRH42407	Soybean	extracellular	78.9	77.27
KRH58524	Soybean	extracellular	78.9	76.33
AT1G48100.1	Thale cress	extracellular	72.78	72.63
VIT_05s0020g00420.t01	Wine grape	extracellular	72.78	72.33
CDY43307	Canola	extracellular	71.52	71.67
Bra018707.1-P	Field mustard	extracellular	71.31	71.61
CDX93644	Canola	extracellular	71.31	71.61
Os05t0279900-00	Rice	cytosol	45.15	67.94
GSMUA_Achr8P06220_001	Banana	extracellular	66.46	67.31
PGSC0003DMT400075723	Potato	extracellular	68.35	66.67
Solyc04g008230.2.1	Tomato	nucleus	68.57	66.33
GSMUA_Achr8P22240_001	Banana	extracellular	60.97	60.59
TraesCS7D01G326800.1	Wheat	extracellular	60.55	58.81
TraesCS7A01G330000.1	Wheat	extracellular	60.55	58.81
HORVU7Hr1G078960.2	Barley	extracellular	60.55	58.69
TraesCS7B01G230600.1	Wheat	extracellular	60.13	58.52
KRG96576	Soybean	extracellular	56.54	58.01
KRH68311	Soybean	extracellular	55.91	57.36
KRH69173	Soybean	extracellular	57.17	57.29
KRH31755	Soybean	extracellular	57.17	57.05
KRG96690	Soybean	extracellular	52.95	54.68
Zm00001d040725_P002	Maize	extracellular, vacuole	53.16	50.2
KXG32428	Sorghum	mitochondrion	53.8	49.04
KRH56581	Soybean	extracellular	40.08	43.28
KRG93260	Soybean	extracellular	39.45	42.21
KRH45648	Soybean	nucleus	45.36	39.96
KRG99364	Soybean	extracellular, nucleus	44.94	39.59
KRH74551	Soybean	extracellular	38.4	39.48
KRH69612	Soybean	extracellular	38.4	39.39
KXG32426	Sorghum	extracellular	55.91	38.29
KRH71979	Soybean	extracellular	33.54	37.15
KRH05150	Soybean	extracellular	20.68	36.43
KRH23567	Soybean	extracellular	30.59	36.16
KRH23942	Soybean	extracellular	33.54	36.14
KRH66273	Soybean	extracellular	23.63	36.13
KRH23786	Soybean	cytosol, extracellular, nucleus, plastid	27.43	36.11
KRH32949	Soybean	extracellular	33.12	35.84
KRH14715	Soybean	cytosol, extracellular, nucleus, plastid	26.16	35.73
KRH66276	Soybean	extracellular	26.37	35.21
KRH13966	Soybean	extracellular	32.49	35.08
KRG88958	Soybean	extracellular	26.16	34.93
Os01t0329300-01	Rice	plastid	55.91	34.91
KRH39858	Soybean	extracellular	32.28	34.69
KRH09740	Soybean	extracellular	31.01	34.59
KRH48978	Soybean	extracellular	21.73	34.56
Zm00001d009167_P001	Maize	extracellular	55.06	34.07
KRH66955	Soybean	extracellular	33.12	33.84
KRH33163	Soybean	extracellular, plastid	33.12	32.91
KRH09752	Soybean	extracellular	31.43	32.53
KRH66305	Soybean	extracellular	25.32	31.17
KRG95273	Soybean	extracellular	33.76	30.59
KRG99363	Soybean	extracellular	33.97	18.27

Protein Annotations

EntrezGene:100809979	Gene3D:2.160.20.10	MapMan:50.3.2	EMBL:ACUP02005400	EnsemblPlantsGene:GLYMA_09G031600	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	UniProt:I1L0M4	InterPro:IPR012334	EnsemblPlants:KRH36916	ProteinID:KRH36916	ProteinID:KRH36916.1
PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF26	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI000233802F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:2592149..2595490

Molecular Weight (calculated)

51662.1 Da

IEP (calculated)

4.602

GRAVY (calculated)

-0.242

Length

474 amino acids

Sequence
(BLAST)

001: MSLIHWSLIL WITMMMLIIH NLDNVEGRYH YHRGKKKISP APTPPEDSPS PPPSNSPSVP SDPYPNDPPG DSPSGCIFDV RSFGAVGDGS ADDTDAFVAA
101: WKEACAVESG VVLVPEDHCF KITSTIFTGP CKPGLVFQVD GTLMAPDGPE SWPKEDSHSQ WLVFYRLDQM TLTGKGTIEG NGEQWWDLPC KPHRGPDGKT
201: VSGPCDSPTM IRFFMSSNLV LSGVKIQNSP MFHVKFDGCQ GVLIDKLSIS SPKLSPNTDG IHLGNTRGVG IYNSMISNGD DCISIGPGCS DVDIEGVTCA
301: PTHGISIGSL GVHNSQACVS NLTVRNTIIK ESDNGLRIKT WQGGTGSVTG LRFENIQMEN VRNCIIIDQY YCMSKECLNQ TSAVHVNDVT YRNIKGTYDV
401: RTPPIHFACS DTVACTNITL SEIELLPYEG ELLDDPFCWN AYGTQETMTI PPLDCLREGE PDTVVELSAY DCRS

Best Arabidopsis Sequence Match ( AT1G48100.1 )
(BLAST)

001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC

Arabidopsis Description

Polygalacturonase At1g48100 [Source:UniProtKB/Swiss-Prot;Acc:Q949Z1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.