Factsheet for Os01t0329300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
extracellular 2
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040725_P002	Maize	extracellular, vacuole	46.38	70.12
KXG32428	Sorghum	mitochondrion	46.38	67.69
KXG32426	Sorghum	extracellular	57.05	62.57
Os05t0279900-00	Rice	cytosol	25.82	62.22
GSMUA_Achr8P06220_001	Banana	extracellular	37.94	61.54
VIT_05s0020g00420.t01	Wine grape	extracellular	36.89	58.7
Os01t0296200-00	Rice	extracellular	20.55	58.65
Zm00001d009167_P001	Maize	extracellular	58.89	58.36
KRH36916	Soybean	extracellular, nucleus	34.91	55.91
KRH42407	Soybean	extracellular	35.44	55.58
KRH11881	Soybean	extracellular	35.05	55.53
KRH58524	Soybean	extracellular	35.84	55.51
AT1G48100.1	Thale cress	extracellular	34.52	55.16
CDY43307	Canola	extracellular	34.12	54.76
PGSC0003DMT400075723	Potato	extracellular	35.05	54.73
Solyc04g008230.2.1	Tomato	nucleus	35.18	54.49
Bra018707.1-P	Field mustard	extracellular	33.86	54.45
CDX93644	Canola	extracellular	33.86	54.45
Os05t0578600-01	Rice	cytosol, extracellular	18.58	45.19
Os01t0549000-00	Rice	extracellular	16.73	44.72
Os01t0637500-00	Rice	cytosol, extracellular	19.24	43.2
Os01t0636500-01	Rice	extracellular	26.35	37.17
Os05t0542800-02	Rice	extracellular	20.82	37.09
Os03t0216800-01	Rice	extracellular	19.76	34.25
Os02t0130200-01	Rice	extracellular, golgi	22.27	33.27
Os03t0808000-00	Rice	extracellular	19.63	32.25
Os05t0542900-01	Rice	extracellular	17.65	30.11
Os01t0172900-00	Rice	nucleus	9.62	24.75

Protein Annotations

Gene3D:2.160.20.10	EntrezGene:4326983	MapMan:50.3.2	ProteinID:BAD54709.1	ProteinID:BAF04835.1	ProteinID:BAS71901.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798
GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlantsGene:Os01g0329300	EnsemblPlants:Os01t0329300-01	PFAM:PF00295
PRINTS:PR01217	PANTHER:PTHR31375	PANTHER:PTHR31375:SF30	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
UniProt:Q5ZDR5	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI0000446A92	RefSeq:XP_015622255.1	SEG:seg

Description

Pectin lyase fold domain containing protein. (Os01t0329300-01)

Coordinates

chr1:+:12701744..12704532

Molecular Weight (calculated)

77708.9 Da

IEP (calculated)

8.601

GRAVY (calculated)

-0.327

Length

759 amino acids

Sequence
(BLAST)

001: MGPTASAAAR RSTRQPSTMT TTMSRRTAAA VAVSVVLLLL SSCLPCCSEA RLHYHRRQHR RAPHRGHHRA AAAAAAATNG GSHISQPPAA LPPDFDSGES
101: PAETPGLPPA GVEDAPPRRS PREKPCPTMQ PPVKPPEELS PVGAPRSRVR AMPPSPSLSP PAKAPSHSHA KTPSMPPAER PALPPTKAPA AISPATPPQL
201: SPANAHSTHH HAKPPSLPPA EPPVPSPSPE HPPRHSPSKP PAYAPAKPPT ALRPAIPPAA MPKPPSVAPV QPPQRPPAPA TKPPPSFPPQ LAPTMPPPAH
301: APAETPAPPT TPPALPPATT APSPKNSSSS PPPPCTGGGG GISNVFDVRA FGATGNGSSA DGDTRAFRAA WKAACSAESA TVLVPSDGVF TITSTIFAGP
401: CKPGLTFQID GVLMPPDGPA SWPAADGRRQ WIVFYRADGM TLSGKGTIEG NGEEWWNLPC KPHRGPNGST LPGPCESPAL IKFVASSDVS VQGLRMENSP
501: QFHLKFDGCS RVLVDGLVVS SPASSPNTDG VHVENTSSVR ILNSRISNGD DCVSIGGGCS GVRVENVTCV HGHGISIGGL GARGARACVS NVTVRGARVV
601: DSDNGVRIKT WQGGAGSVSG VVFDAVQMVN VRGCIVIDQY YCDAHGGAGA GCANQTAAVR VDGVAYRGIR GTYNPRGGGG APVRFACSDT VACTGITMTD
701: VELLPAGGGD EGGGASAGAK LADPYCWNAY GVMETLTQPP VHCLQEGRPE SLQDQLASC

Best Arabidopsis Sequence Match ( AT1G48100.1 )
(BLAST)

001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC

Arabidopsis Description

Polygalacturonase At1g48100 [Source:UniProtKB/Swiss-Prot;Acc:Q949Z1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.