Factsheet for Os05t0279900-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
MultiLoc:	cytosol
Plant-mPloc:	extracellular, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0296200-00	Rice	extracellular	54.92	65.04
TraesCS7D01G326800.1	Wheat	extracellular	91.75	59.22
HORVU7Hr1G078960.2	Barley	extracellular	91.75	59.1
TraesCS7A01G330000.1	Wheat	extracellular	91.43	59.02
TraesCS7B01G230600.1	Wheat	extracellular	90.79	58.73
GSMUA_Achr8P22240_001	Banana	extracellular	75.24	49.69
VIT_05s0020g00420.t01	Wine grape	extracellular	70.16	46.33
Os05t0578600-01	Rice	cytosol, extracellular	45.4	45.83
PGSC0003DMT400075723	Potato	extracellular	69.84	45.27
KRH42407	Soybean	extracellular	69.52	45.25
KRH36916	Soybean	extracellular, nucleus	67.94	45.15
Bra018707.1-P	Field mustard	extracellular	67.3	44.92
CDX93644	Canola	extracellular	67.3	44.92
KRH11881	Soybean	extracellular	68.25	44.89
AT1G48100.1	Thale cress	extracellular	67.62	44.84
CDY43307	Canola	extracellular	67.3	44.82
Solyc04g008230.2.1	Tomato	nucleus	69.52	44.69
KRH58524	Soybean	extracellular	69.21	44.49
Os01t0637500-00	Rice	cytosol, extracellular	45.4	42.31
Os01t0549000-00	Rice	extracellular	37.78	41.9
Os05t0542800-02	Rice	extracellular	38.73	28.64
Os03t0216800-01	Rice	extracellular	38.41	27.63
Os01t0636500-01	Rice	extracellular	46.03	26.95
Os01t0329300-01	Rice	plastid	62.22	25.82
Os05t0542900-01	Rice	extracellular	35.56	25.17
Os03t0808000-00	Rice	extracellular	36.83	25.11
Os02t0130200-01	Rice	extracellular, golgi	37.78	23.43
Os01t0172900-00	Rice	nucleus	14.29	15.25

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A0P0WK35	ProteinID:BAS93135.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798
GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlantsGene:Os05g0279900	EnsemblPlants:Os05t0279900-00	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF26	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI000393A110	:	:	:

Description

Similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. (Os05t0279900-00)

Coordinates

chr5:+:11700217..11702760

Molecular Weight (calculated)

34596.7 Da

IEP (calculated)

4.737

GRAVY (calculated)

-0.243

Length

315 amino acids

Sequence
(BLAST)

001: MPPDGPDCWP PSDNRRQWLV FSNLDGLTLR GAGTIEGNGE GWWNLPCKPH RLVRFFMSRN LVVEGLRVEN SPEFHFRFDG CSDVRVDGLS IRSPANSPNT
101: DGIHVENTQR VAIYNSMISN GDDCISIGTG SYDVDIQNVS CGPGHGISIG SLGVHNSQAC VANVTVRNAV IRNSDNGLRI KTWQGGMGSV SGINFDTVSM
201: ENVRNCIIID QYYCLDKRCM NQSTAVHVTD VSYANVRGSY DVRAAPIHFA CSDTVPCTNI TMSEVELLPF SGELVDDPFC WSAYGLQQTP TIPPIYCLQD
301: GLPDSLLDNP DLRCR

Best Arabidopsis Sequence Match ( AT1G48100.1 )
(BLAST)

001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC

Arabidopsis Description

Polygalacturonase At1g48100 [Source:UniProtKB/Swiss-Prot;Acc:Q949Z1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.