Factsheet for PGSC0003DMT400075723

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 6
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g008230.2.1	Tomato	nucleus	97.53	96.73
VIT_05s0020g00420.t01	Wine grape	extracellular	71.4	72.75
Os05t0279900-00	Rice	cytosol	45.27	69.84
KRH36916	Soybean	extracellular, nucleus	66.67	68.35
GSMUA_Achr8P06220_001	Banana	extracellular	65.64	68.16
KRH11881	Soybean	extracellular	67.08	68.06
KRH42407	Soybean	extracellular	67.08	67.36
CDY43307	Canola	extracellular	65.23	67.02
AT1G48100.1	Thale cress	extracellular	65.43	66.95
Bra018707.1-P	Field mustard	extracellular	64.81	66.74
CDX93644	Canola	extracellular	64.81	66.74
KRH58524	Soybean	extracellular	66.87	66.33
GSMUA_Achr8P22240_001	Banana	extracellular	62.14	63.31
TraesCS7A01G330000.1	Wheat	extracellular	61.93	61.68
TraesCS7B01G230600.1	Wheat	extracellular	61.73	61.6
TraesCS7D01G326800.1	Wheat	extracellular	61.52	61.27
HORVU7Hr1G078960.2	Barley	extracellular	60.91	60.53
PGSC0003DMT400007095	Potato	cytosol	53.5	59.77
PGSC0003DMT400013344	Potato	extracellular	55.56	57.2
Zm00001d040725_P002	Maize	extracellular, vacuole	53.7	51.99
KXG32428	Sorghum	mitochondrion	53.91	50.38
PGSC0003DMT400035162	Potato	extracellular	42.8	40.7
PGSC0003DMT400035101	Potato	extracellular, golgi	39.09	39.5
KXG32426	Sorghum	extracellular	55.97	39.31
PGSC0003DMT400017691	Potato	extracellular	28.19	39.03
PGSC0003DMT400077010	Potato	cytosol	37.04	38.88
PGSC0003DMT400056828	Potato	extracellular	30.86	37.69
PGSC0003DMT400008955	Potato	extracellular	26.95	37.64
PGSC0003DMT400055713	Potato	extracellular	33.54	35.59
Zm00001d009167_P001	Maize	extracellular	55.76	35.38
Os01t0329300-01	Rice	plastid	54.73	35.05
PGSC0003DMT400001638	Potato	extracellular, plastid	32.3	34.97
PGSC0003DMT400080722	Potato	extracellular	32.72	34.57
PGSC0003DMT400070039	Potato	cytosol	27.98	33.17

Protein Annotations

EntrezGene:102589249	Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28
InterPro:IPR012334	UniProt:M1CVM9	PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400029450	PGSC:PGSC0003DMG400029450	EnsemblPlants:PGSC0003DMT400075723
PANTHER:PTHR31375	PANTHER:PTHR31375:SF26	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI00029493D4	RefSeq:XP_006355087.2	SEG:seg	:	:	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400029450]

Coordinates

chr4:-:3055794..3063174

Molecular Weight (calculated)

52396.3 Da

IEP (calculated)

4.641

GRAVY (calculated)

-0.110

Length

486 amino acids

Sequence
(BLAST)

001: MEKIFLLLCL IIIITSNSIN VDARHHISKK TKSKKVNNAP SPIEGSVNEP SPSPVSPPVS PVSSPTSNVV PSDPSYGGGP ALNPEEDCIF DVMEYGAVGD
101: GSTDDTEAFI AAWKAACQVE SAVLLAPADR IFMITSTIFY GPCKPGLEFR VNGVLMTPEG PDCWPKKDSK RQWIVFYKLD NMTFTGTGTI EGNGEKWWEL
201: PCKPHRGPNG STLPGPCDSP SMIRFFMSSN LTVRGLRIQN SPMFHMKFDG CEGVLIDQLS ISSPKLSPNT DGIHIEDTKS VGIYNSVIAN GDDCISIGPG
301: CSNVEIEAVT CGPSHGISIG SLGVHNSQAC VSNITVRNAI IRDSDNGVRI KTWQGGSGSV TGLSFDTIQM ENVRNCIIID QYYCLSKGCR NETSAVSVGD
401: ISYRNIKGTY DVRSAPIHFA CSDTVACTNI TMSEVELLPH EGELMEDPFC WNAYGIQQTL TIPPIDCLQD GMPLAIGEAV DYSCSI

Best Arabidopsis Sequence Match ( AT1G48100.1 )
(BLAST)

001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC

Arabidopsis Description

Polygalacturonase At1g48100 [Source:UniProtKB/Swiss-Prot;Acc:Q949Z1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.