Factsheet for Zm00001d040725_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

mitochondrion 3
extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32428	Sorghum	mitochondrion	92.83	89.62
GSMUA_Achr8P06220_001	Banana	extracellular	55.58	59.62
VIT_05s0020g00420.t01	Wine grape	extracellular	53.59	56.39
CDY43307	Canola	extracellular	51.79	54.97
Bra018707.1-P	Field mustard	extracellular	51.59	54.87
CDX93644	Canola	extracellular	51.59	54.87
AT1G48100.1	Thale cress	extracellular	51.79	54.74
KRH42407	Soybean	extracellular	52.19	54.13
PGSC0003DMT400075723	Potato	extracellular	51.99	53.7
Zm00001d009167_P001	Maize	extracellular	81.67	53.52
KRH58524	Soybean	extracellular	51.99	53.27
Solyc04g008230.2.1	Tomato	nucleus	51.99	53.27
KRH36916	Soybean	extracellular, nucleus	50.2	53.16
KRH11881	Soybean	extracellular	49.4	51.77
Os01t0329300-01	Rice	plastid	70.12	46.38
Zm00001d040589_P001	Maize	extracellular	45.22	45.49
Zm00001d009057_P001	Maize	extracellular	37.45	44.44
Zm00001d011156_P001	Maize	plastid	34.66	39.91
Zm00001d038874_P002	Maize	extracellular	31.87	38.84
Zm00001d045974_P001	Maize	extracellular	32.27	38.66
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	37.25	36.24
Zm00001d034552_P001	Maize	extracellular	30.88	35.15
Zm00001d034551_P001	Maize	extracellular	30.48	35.09
Zm00001d044110_P001	Maize	extracellular	37.05	34.32
Zm00001d011444_P002	Maize	extracellular	36.65	34.01
Zm00001d048079_P001	Maize	extracellular	30.28	32.9
Zm00001d015129_P001	Maize	mitochondrion	33.67	32.75
Zm00001d013032_P001	Maize	extracellular	31.67	32.65
Zm00001d034559_P001	Maize	extracellular	30.68	32.42
Zm00001d039668_P001	Maize	plastid	28.09	32.27
Zm00001d038875_P001	Maize	extracellular	26.29	28.03

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1D6MSE9	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334
ProteinID:ONM31883.1	ProteinID:ONM31884.1	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF30
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix
UniParc:UPI000220F924	EnsemblPlantsGene:Zm00001d040725	EnsemblPlants:Zm00001d040725_P002	EnsemblPlants:Zm00001d040725_T002	SEG:seg	:

Description

Polygalacturonase

Coordinates

chr3:+:60285344..60288098

Molecular Weight (calculated)

53469.6 Da

IEP (calculated)

5.063

GRAVY (calculated)

-0.225

Length

502 amino acids

Sequence
(BLAST)

001: MRPAPETSTR RPQLRRRRPV PLVTVAVSLA LISLACLPVF ADASRALHRD REEHRRQHHR TEDKKSRVSL PPDADGDSPP EPPDSGGAPP PADDSDCGNV
101: FDVRAFGASG DGSCVDDDTA AFRAAWKAAC SSDSAAATLL VPSDGVFTIA STIFSGPCKP DLTFQIDGVL MPPDGPASWP ATDSRKQWIV FYKADRLTLA
201: GEGTIEGNGE EWWDLPCKPH RGPNGSTLRG PCDSPALIRF FSSNDVTVCG LRIENSPQFH LRFDDCERVR VDGLFVSSPA SSPNTDGVHV ENTKSVQILN
301: SRIYNGDDCV SIGAGCSDVH VENITCGHGH GISIGSLGVH NTHACVSNVT VRNVRILDSD NGVRIKTWQG GAGAVSAVEF TGVQMQNVKN CIVIDQYYCL
401: GHGCANQTSA VRVAGVAYRD IHGTYNPQAG APIRLACSDA VACTDITMSG VELLPAGGDD GALLADPYCW NAYGVMETLT LPPVYCLLEG SPESLQDPLT
501: SC

Best Arabidopsis Sequence Match ( AT1G48100.1 )
(BLAST)

001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC

Arabidopsis Description

Polygalacturonase At1g48100 [Source:UniProtKB/Swiss-Prot;Acc:Q949Z1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.