Factsheet for Zm00001d048079_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
extracellular 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	extracellular, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39856	Sorghum	extracellular	75.54	81.16
Os03t0216800-01	Rice	extracellular	64.94	68.49
HORVU0Hr1G038940.1	Barley	cytosol	58.87	67.33
TraesCS4A01G066700.1	Wheat	extracellular	59.74	63.74
TraesCS4B01G244300.1	Wheat	extracellular	59.74	63.74
TraesCS4D01G243600.1	Wheat	extracellular	59.52	63.51
VIT_13s0064g00760.t01	Wine grape	cytosol	35.71	49.7
GSMUA_Achr1P22940_001	Banana	extracellular	45.45	47.62
Bra029690.1-P	Field mustard	cytosol	40.26	45.81
KRH23942	Soybean	extracellular	43.07	45.23
KRH32949	Soybean	extracellular	42.64	44.98
VIT_08s0007g08330.t01	Wine grape	extracellular	42.86	44.59
KRH13966	Soybean	extracellular	42.21	44.42
CDY28005	Canola	extracellular	40.48	44.42
CDY35976	Canola	extracellular	40.48	44.42
KRH39858	Soybean	extracellular	42.21	44.22
Solyc04g015530.1.1	Tomato	cytosol	37.45	44.13
CDX74019	Canola	extracellular	41.56	43.94
KRH71979	Soybean	extracellular	40.69	43.93
Bra001279.1-P	Field mustard	extracellular	41.34	43.71
Bra004655.1-P	Field mustard	extracellular	40.48	43.69
CDX79907	Canola	extracellular	41.13	43.68
CDY48768	Canola	extracellular	40.69	43.22
CDY14791	Canola	extracellular	40.26	42.96
Bra016911.1-P	Field mustard	extracellular	40.26	42.96
CDY07963	Canola	extracellular	40.69	42.92
Bra007332.1-P	Field mustard	extracellular	40.04	42.82
CDX72025	Canola	extracellular	40.04	42.82
AT2G41850.1	Thale cress	extracellular	40.04	42.73
CDY06902	Canola	extracellular	40.04	42.73
VIT_08s0007g07750.t01	Wine grape	extracellular	40.69	42.53
VIT_08s0007g07760.t01	Wine grape	extracellular	39.83	42.3
CDX67693	Canola	extracellular	39.61	42.26
Bra003286.1-P	Field mustard	extracellular	39.61	42.26
VIT_08s0007g07770.t01	Wine grape	extracellular	40.04	41.86
VIT_13s0064g00750.t01	Wine grape	cytosol	41.13	41.67
PGSC0003DMT400017691	Potato	extracellular	31.6	41.6
VIT_08s0007g07780.t01	Wine grape	extracellular	38.96	41.47
AT3G57510.1	Thale cress	extracellular	38.53	41.3
AT3G07970.1	Thale cress	extracellular	39.18	41.23
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	39.61	40.85
Solyc01g087280.1.1	Tomato	extracellular	37.45	40.71
Zm00001d034551_P001	Maize	extracellular	37.66	39.91
Solyc10g080210.1.1	Tomato	extracellular	39.39	39.82
Zm00001d034552_P001	Maize	extracellular	37.88	39.68
KRH33163	Soybean	extracellular, plastid	40.69	39.41
Zm00001d038874_P002	Maize	extracellular	34.42	38.59
KRH66955	Soybean	extracellular	38.53	38.36
Zm00001d013032_P001	Maize	extracellular	40.04	37.99
Zm00001d034559_P001	Maize	extracellular	38.96	37.89
PGSC0003DMT400070039	Potato	cytosol	33.12	37.32
KRG95273	Soybean	extracellular	38.96	34.42
Zm00001d015129_P001	Maize	mitochondrion	37.66	33.72
Zm00001d045974_P001	Maize	extracellular	29.22	32.22
Zm00001d039668_P001	Maize	plastid	30.3	32.04
Zm00001d011156_P001	Maize	plastid	30.09	31.88
CDY61868	Canola	extracellular	37.88	31.88
Zm00001d040589_P001	Maize	extracellular	33.12	30.66
Zm00001d009057_P001	Maize	extracellular	27.92	30.5
Zm00001d040725_P002	Maize	extracellular, vacuole	32.9	30.28
Zm00001d038875_P001	Maize	extracellular	30.3	29.72
CDY06100	Canola	extracellular	27.06	29.27
Zm00001d044110_P001	Maize	extracellular	33.12	28.23
Zm00001d011444_P002	Maize	extracellular	32.9	28.1
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	31.17	27.91
Zm00001d009167_P001	Maize	extracellular	32.03	19.32

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:AQL08631.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:K7VKI0	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF95	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
UniParc:UPI00022205CA	EnsemblPlantsGene:Zm00001d048079	EnsemblPlants:Zm00001d048079_P001	EnsemblPlants:Zm00001d048079_T001	SEG:seg	:

Description

Polygalacturonase

Coordinates

chr9:-:149449795..149452163

Molecular Weight (calculated)

49636.0 Da

IEP (calculated)

6.412

GRAVY (calculated)

0.007

Length

462 amino acids

Sequence
(BLAST)

001: MLVPSSPLLS SSPPLHSPEP PPHLRMGGST TTVVVMLIVV LHYYMLLVDG ASWDEVSSEA DGPAPAEGPD DELWLPRAGP PPRVVNVDDY GAADAGVDAA
101: EAFLAAWSEA CNSSAGRSVF LVPEGKAYLL MPVSFRGPCR AASVAAMIKG TLEAPSDRSV WLERGLQEWI TFEGVDRLRV LGGGTLDGNG MQWWINSCKL
201: NRSARCVTGP TALYLRRCTR LVVEELQVRD SMQMHVAIAY SRDVAVSRLS ITAPAWSPNT DGIHVSNSRE VSISRCTIAT GDDCVSIVTG STFVRVTSIF
301: CGPGHGISIG SLGANNSWAH VSDVLVEKAT LLGTTNGVRI KTWQGGYGYA ERISFRDISM RNVTNPIIID QNYCDSARTT TPSSCHDQGS AVAVRNISYR
401: NIHGTSASRV AISLVCSAAL RCDGIRMQDV YLVGEGRYAT CSYRNATVVQ SGYTFPFCSA EM

Best Arabidopsis Sequence Match ( AT3G07970.1 )
(BLAST)

001: MYEKIIILSV FLLTFLPSCF SSYPFNHRDD LFMSSNVYYE TNRQHQHGHN TRNSHLKNRH GYAPRSSPRS FNVNTFGAKA NGNDDSKAFM KAWEAACSST
101: GIVYIVAPKN RDYMLKAVTF SGPCKSSLII FKIYGRIEAW ENPSDYKERR HWIVFENVNN LRVEGGGRID GNGHIWWPKS CKINPQLPCL GAPTAVTFVE
201: CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS PNTDGIHVSG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS
301: EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV EACPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKNIPC
401: RGISMQNVKL VDQTQQDVSK ASCSNVKLDT RGNVSPLCT

Arabidopsis Description

QRT2Polygalacturonase QRT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.