Factsheet for VIT_08s0007g08330.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g07750.t01	Wine grape	extracellular	83.78	84.16
VIT_08s0007g07760.t01	Wine grape	extracellular	82.21	83.91
VIT_08s0007g07770.t01	Wine grape	extracellular	83.11	83.48
VIT_08s0007g07780.t01	Wine grape	extracellular	79.05	80.88
Solyc04g015530.1.1	Tomato	cytosol	53.83	60.97
KRH71979	Soybean	extracellular	56.76	58.88
VIT_13s0064g00760.t01	Wine grape	cytosol	43.47	58.13
AT2G41850.1	Thale cress	extracellular	53.6	54.97
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	48.87	54.66
Bra003286.1-P	Field mustard	extracellular	52.93	54.27
CDX67693	Canola	extracellular	52.93	54.27
CDX72025	Canola	extracellular	52.7	54.17
CDY14791	Canola	extracellular	52.48	53.81
AT3G57510.1	Thale cress	extracellular	52.03	53.6
Bra016911.1-P	Field mustard	extracellular	52.25	53.58
CDY48768	Canola	extracellular	52.48	53.56
CDX79907	Canola	extracellular	52.48	53.56
CDY06902	Canola	extracellular	52.03	53.35
Bra004655.1-P	Field mustard	extracellular	51.35	53.27
KRH33163	Soybean	extracellular, plastid	57.21	53.25
Bra007332.1-P	Field mustard	extracellular	51.8	53.24
Solyc10g080210.1.1	Tomato	extracellular	54.73	53.17
KRH66955	Soybean	extracellular	55.41	53.02
PGSC0003DMT400070039	Potato	cytosol	48.87	52.93
VIT_13s0064g00750.t01	Wine grape	cytosol	53.6	52.19
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	51.58	51.12
HORVU0Hr1G038940.1	Barley	cytosol	45.05	49.51
KXG39856	Sorghum	extracellular	46.17	47.67
GSMUA_Achr1P22940_001	Banana	extracellular	47.07	47.39
TraesCS4A01G066700.1	Wheat	extracellular	45.95	47.11
KRG95273	Soybean	extracellular	55.41	47.04
TraesCS4B01G244300.1	Wheat	extracellular	45.5	46.65
TraesCS4D01G243600.1	Wheat	extracellular	45.27	46.42
Os03t0216800-01	Rice	extracellular	45.72	46.35
Zm00001d048079_P001	Maize	extracellular	44.59	42.86
VIT_09s0002g06380.t01	Wine grape	cytosol	39.41	42.27
CDY61868	Canola	extracellular	50.9	41.17
VIT_09s0002g06650.t01	Wine grape	extracellular	37.39	41.09
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	34.01	40.7
VIT_09s0002g06580.t01	Wine grape	cytosol	34.23	38.87
VIT_09s0002g06610.t01	Wine grape	extracellular	34.01	38.82
CDY06100	Canola	extracellular	37.16	38.64
VIT_17s0000g05670.t01	Wine grape	extracellular	33.56	37.91
VIT_17s0000g05660.t01	Wine grape	extracellular	32.43	37.21
VIT_14s0060g00620.t01	Wine grape	extracellular	37.16	35.56
VIT_07s0005g02090.t01	Wine grape	extracellular	36.71	35.05
VIT_05s0020g00420.t01	Wine grape	extracellular	37.16	34.59
VIT_14s0066g01060.t01	Wine grape	extracellular	37.16	34.16
VIT_01s0127g00120.t01	Wine grape	extracellular	34.46	31.94
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	35.81	30.7

Protein Annotations

EntrezGene:100855221	wikigene:100855221	Gene3D:2.160.20.10	MapMan:21.3.5.1.1	ProteinID:AAK81876	ProteinID:AAK81876.1
EMBL:AY043233	ProteinID:CBI29859	ProteinID:CBI29859.3	EMBL:FN595991	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	EntrezGene:LOC100855221	wikigene:LOC100855221	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF3	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	UniProt:Q94B15	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	TIGR:TC52034	TMHMM:TMhelix	UniParc:UPI000009D263	ArrayExpress:VIT_08s0007g08330
EnsemblPlantsGene:VIT_08s0007g08330	EnsemblPlants:VIT_08s0007g08330.t01	RefSeq:XP_003632658	RefSeq:XP_003632658.1	RefSeq:XP_003632658.2	SEG:seg

Description

Polygalacturonase PG1 [Source:UniProtKB/TrEMBL;Acc:Q94B15]

Coordinates

chr8:+:21672950..21675646

Molecular Weight (calculated)

47422.3 Da

IEP (calculated)

8.780

GRAVY (calculated)

-0.195

Length

444 amino acids

Sequence
(BLAST)

001: MSLQRRFVPC LIVFLLSFPC YFSLQASPPY DYLGEASGYD SQANHLHFST IQSRETENWP WRKFGSKTGK SLASVKMVNV NYYGAKGDGS DATEAFKKAW
101: KAACSSPGSV LVVPKNKNYL LKPITFQGPC KSSITVQIYG TVQASTDRSA YSNDMTHWLI FENVQNLAVQ GGGTINGNGK TWWENSCKVN YDLPCKGAPT
201: ALTFYNCKNL AVKNLKIQNA QQMHVSFEKC VGVQASGLTI TAPGNSPNTD GIHVSYTKII QISSSVIGTG DDCISIVSGS QKVQVNGITC GPGHGISIGS
301: LGSGDSEAHV SDVTVNGATL SGTTNGVRIK TWQGGSGSAS NIKFQNIVMH NVENPIIIDQ KYCDQSKPCK SQSSAVQVQN VLYQNIKGTS SSKEAISLDC
401: SAKFPCQGIL LRDIDIKVGG GKAAKAVCSN ARVTVMGDVS PNCA

Best Arabidopsis Sequence Match ( AT3G57510.1 )
(BLAST)

001: MARCCRHLAV FLCVLLMLSL CKALSSNVDD GYGHEDGSFE SDSLLKLNND DVLSLISSDE TTLEASTVSV SNFGAKGDGK TDDTQAFKKA WKKACSTNGV
101: TTFLVPKGKT YLLKSTRFRG PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKTWWQNSC KIDKSKPCTK APTALTLYNL
201: KNLNVKNLRV KNAQQIQISI EKCNKVEVSN VEITAPGDSP NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK
301: AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQDYCDKDK CEDQESAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG
401: IVLENVKIKG GTASCKNANV KNQGTVSPKC S

Arabidopsis Description

ADPG1Polygalacturonase ADPG1 [Source:UniProtKB/Swiss-Prot;Acc:O23147]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.