Factsheet for VIT_14s0060g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007095	Potato	cytosol	67.46	71.95
VIT_07s0005g02090.t01	Wine grape	extracellular	69.83	69.68
Solyc01g100980.2.1	Tomato	extracellular	70.26	68.49
KRG96690	Soybean	extracellular	65.52	66.23
GSMUA_Achr11P...	Banana	extracellular	59.05	62.84
Os01t0296200-00	Rice	extracellular	35.56	62.03
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	61.85	57.29
VIT_05s0020g00420.t01	Wine grape	extracellular	56.47	54.93
HORVU1Hr1G067840.1	Barley	extracellular, plastid	55.39	53.99
TraesCS1D01G311000.1	Wheat	extracellular	55.39	53.65
TraesCS1B01G322500.1	Wheat	extracellular	55.6	53.31
TraesCS1A01G311100.1	Wheat	extracellular	55.39	53.1
GSMUA_Achr3P08400_001	Banana	extracellular	62.28	51.42
Zm00001d040589_P001	Maize	extracellular	54.31	50.5
Zm00001d009057_P001	Maize	extracellular	45.47	49.88
EES00620	Sorghum	extracellular	53.02	48.62
VIT_09s0002g06380.t01	Wine grape	cytosol	37.07	41.55
VIT_13s0064g00760.t01	Wine grape	cytosol	29.53	41.27
VIT_09s0002g06610.t01	Wine grape	extracellular	32.76	39.07
VIT_14s0066g01060.t01	Wine grape	extracellular	40.52	38.92
VIT_17s0000g05670.t01	Wine grape	extracellular	32.76	38.68
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	30.82	38.54
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	42.89	38.42
VIT_09s0002g06580.t01	Wine grape	cytosol	31.9	37.85
VIT_08s0007g07760.t01	Wine grape	extracellular	35.34	37.7
VIT_09s0002g06650.t01	Wine grape	extracellular	32.76	37.62
VIT_08s0007g07750.t01	Wine grape	extracellular	35.78	37.56
VIT_08s0007g08330.t01	Wine grape	extracellular	35.56	37.16
VIT_08s0007g07780.t01	Wine grape	extracellular	34.7	37.1
VIT_01s0127g00120.t01	Wine grape	extracellular	38.15	36.95
VIT_08s0007g07770.t01	Wine grape	extracellular	35.13	36.88
VIT_17s0000g05660.t01	Wine grape	extracellular	30.17	36.18
VIT_13s0064g00750.t01	Wine grape	cytosol	35.13	35.75

Protein Annotations

EntrezGene:100264928	wikigene:100264928	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:CBI39645	ProteinID:CBI39645.3
UniProt:D7UA81	EMBL:FN596746	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EntrezGene:LOC100264928
wikigene:LOC100264928	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF13	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI00015C9DE3
ArrayExpress:VIT_14s0060g00620	EnsemblPlantsGene:VIT_14s0060g00620	EnsemblPlants:VIT_14s0060g00620.t01	RefSeq:XP_002276945	RefSeq:XP_002276945.1	SEG:seg

Description

No Description!

Coordinates

chr14:+:564029..565883

Molecular Weight (calculated)

50882.5 Da

IEP (calculated)

6.946

GRAVY (calculated)

-0.114

Length

464 amino acids

Sequence
(BLAST)

001: MEFSRAFVVV ASIFLCFLLV FFCSRFQDHE YHEEHEHLHT FSRISLPPSP APEAASPSYN GYSSIYTAVF NVRSFGAVGD GVTDDTQAFK MTWDTACQAE
101: SATLLVPHGH SFMIQSTIFT GPCKTGLIFQ IEGTIMAPDG PSSWPQGNSR RQWLVFYRIN EMSMQGGGVI DGRGEKWWDL PCKPHKGING TTLPGPCDSP
201: VAIRFFTSSN LTVQGLKIKN SPQFHFRFDN CQNVHIDLLN IKAPAESPNT DGIHIENTNG VKIYNSIVSN GDDCVSIGAG CHNVDIRNIT CGPSHGISIG
301: SLGIRNSRAC VSNITVTDSI IKHSANGVRI KTWQGGSGSV SKVTFNNIHM DTVRNPIIID QYYCLTKGCV NQTSAVLISH ISYTNIKGTY DVRSSPMHFA
401: CSDSVPCTNL TLSEVELLPS KGQIMMNPFC WNAYGASQTL TIPPLFCLLE GTSQSLPQRE VDKC

Best Arabidopsis Sequence Match ( AT1G02460.1 )
(BLAST)

001: MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S

Arabidopsis Description

At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.