Factsheet for Os01t0296200-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0279900-00	Rice	cytosol	65.04	54.92
CDY67535	Canola	extracellular	61.28	52.41
Zm00001d009057_P001	Maize	extracellular	81.95	51.54
HORVU1Hr1G067840.1	Barley	extracellular, plastid	86.47	48.32
TraesCS1D01G311000.1	Wheat	extracellular	84.96	47.18
TraesCS1A01G311100.1	Wheat	extracellular	85.34	46.9
TraesCS1B01G322500.1	Wheat	extracellular	84.59	46.49
Zm00001d040589_P001	Maize	extracellular	82.71	44.09
EES00620	Sorghum	extracellular	83.46	43.87
Os05t0578600-01	Rice	cytosol, extracellular	50.0	42.63
GSMUA_Achr11P...	Banana	extracellular	69.17	42.2
Os01t0549000-00	Rice	extracellular	44.74	41.9
Os01t0637500-00	Rice	cytosol, extracellular	50.38	39.65
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	72.18	38.32
PGSC0003DMT400007095	Potato	cytosol	60.53	37.01
VIT_14s0060g00620.t01	Wine grape	extracellular	62.03	35.56
KRG96690	Soybean	extracellular	61.28	35.51
VIT_07s0005g02090.t01	Wine grape	extracellular	62.03	35.48
KRH69173	Soybean	extracellular	62.78	35.31
KRH31755	Soybean	extracellular	62.78	35.16
PGSC0003DMT400013344	Potato	extracellular	62.03	34.96
KRG96576	Soybean	extracellular	60.53	34.85
KRH68311	Soybean	extracellular	60.15	34.63
Solyc01g079130.1.1	Tomato	extracellular	61.28	34.53
AT1G02460.1	Thale cress	extracellular	62.78	34.01
Solyc01g100980.2.1	Tomato	extracellular	60.53	33.82
CDX89966	Canola	extracellular	62.41	33.81
CDY15246	Canola	extracellular	62.03	33.6
Bra033328.1-P	Field mustard	extracellular	62.03	33.6
GSMUA_Achr3P08400_001	Banana	extracellular	70.68	33.45
AT4G01890.1	Thale cress	extracellular	58.65	33.4
Bra032600.1-P	Field mustard	extracellular	61.65	33.4
CDX77909	Canola	extracellular	61.28	33.2
Bra000911.1-P	Field mustard	extracellular, vacuole	58.65	32.1
Os05t0542800-02	Rice	extracellular	40.6	25.35
Os01t0636500-01	Rice	extracellular	51.13	25.28
Os03t0808000-00	Rice	extracellular	39.1	22.51
Os03t0216800-01	Rice	extracellular	36.84	22.37
Os05t0542900-01	Rice	extracellular	34.59	20.67
Os02t0130200-01	Rice	extracellular, golgi	39.47	20.67
Os01t0329300-01	Rice	plastid	58.65	20.55
CDY71357	Canola	extracellular, vacuole	21.05	17.67
Os01t0172900-00	Rice	nucleus	13.53	12.2

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A0P0V1G9	ProteinID:BAS71688.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0016787	GO:GO:0016798
GO:GO:0019538	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlantsGene:Os01g0296200	EnsemblPlants:Os01t0296200-00
PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF99	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI000393C2E9	:	:

Description

Similar to polygalacturonase. (Os01t0296200-00)

Coordinates

chr1:+:10830393..10831757

Molecular Weight (calculated)

28196.1 Da

IEP (calculated)

5.561

GRAVY (calculated)

-0.056

Length

266 amino acids

Sequence
(BLAST)

001: SLQAMRFAIS NNVTVRGLKV QNSPEFHFRF DNCNGVRVDG LSISSPALSP NTDGIHVENT SDVLITNTVV SNGDDCVSIG AGTLNVHIEN VTCGPGHGIS
101: IGSLGKAGTK ACVANVTVRN AVIRHSDNGV RIKTWQGGSG SVSAVAFENV RMDAVRNPII IDQYYCLSKS CENETTAVFV NGVSYSGIRG TYDVRGPPIH
201: FGCSDAVPCT NITLSDVELL PASGDTVDEP FCWNVYGNAA TPTVPPVSCL SSGFPNYTEK KDLQCY

Best Arabidopsis Sequence Match ( AT1G02460.1 )
(BLAST)

001: MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S

Arabidopsis Description

At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.