Factsheet for Solyc01g079130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013344	Potato	extracellular	97.25	97.25
VIT_07s0005g02090.t01	Wine grape	extracellular	69.07	70.11
KRG96576	Soybean	extracellular	66.95	68.4
CDY67535	Canola	extracellular	44.92	68.17
KRH69173	Soybean	extracellular	67.8	67.65
KRH68311	Soybean	extracellular	66.1	67.53
KRH31755	Soybean	extracellular	67.8	67.37
Bra032600.1-P	Field mustard	extracellular	66.53	63.95
CDX89966	Canola	extracellular	66.53	63.95
Bra033328.1-P	Field mustard	extracellular	66.31	63.75
AT1G02460.1	Thale cress	extracellular	66.31	63.75
CDX77909	Canola	extracellular	66.1	63.54
CDY15246	Canola	extracellular	65.89	63.34
Solyc01g100980.2.1	Tomato	extracellular	62.92	62.4
Os01t0296200-00	Rice	extracellular	34.53	61.28
GSMUA_Achr11P...	Banana	extracellular	55.72	60.32
AT4G01890.1	Thale cress	extracellular	58.47	59.1
Bra000911.1-P	Field mustard	extracellular, vacuole	58.9	57.2
Solyc04g008230.2.1	Tomato	nucleus	57.84	55.71
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	58.9	55.49
HORVU1Hr1G067840.1	Barley	extracellular, plastid	54.45	53.99
TraesCS1B01G322500.1	Wheat	extracellular	54.24	52.89
TraesCS1A01G311100.1	Wheat	extracellular	54.24	52.89
TraesCS1D01G311000.1	Wheat	extracellular	53.6	52.82
CDY71357	Canola	extracellular, vacuole	34.75	51.73
Zm00001d040589_P001	Maize	extracellular	54.24	51.3
EES00620	Sorghum	extracellular	54.03	50.4
Zm00001d009057_P001	Maize	extracellular	45.13	50.35
GSMUA_Achr3P08400_001	Banana	extracellular	58.05	48.75
Solyc05g005170.2.1	Tomato	nucleus	44.28	41.14
Solyc07g015870.2.1	Tomato	extracellular	38.35	40.31
Solyc04g015530.1.1	Tomato	cytosol	32.42	39.03
Solyc03g116500.2.1	Tomato	nucleus	37.29	38.94
Solyc08g060970.2.1	Tomato	nucleus	32.2	38.29
Solyc06g068040.2.1	Tomato	nucleus	35.38	38.22
Solyc05g005040.2.1	Tomato	extracellular	37.08	37.16
Solyc09g098270.2.1	Tomato	cytosol	33.9	36.95
Solyc12g009420.1.1	Tomato	extracellular	31.36	36.36
Solyc03g113230.1.1	Tomato	extracellular	31.14	35.77
Solyc04g025440.2.1	Tomato	extracellular	34.75	35.65
Solyc01g087280.1.1	Tomato	extracellular	31.57	35.06
Solyc10g080210.1.1	Tomato	extracellular	32.63	33.7
Solyc03g116580.2.1	Tomato	extracellular	30.93	33.41

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:K4AXF9
PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF43	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g079130.1	EnsemblPlants:Solyc01g079130.1.1	TMHMM:TMhelix
UniParc:UPI0002761B32	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:78208452..78211146

Molecular Weight (calculated)

51508.9 Da

IEP (calculated)

6.405

GRAVY (calculated)

-0.188

Length

472 amino acids

Sequence
(BLAST)

001: MASLSSTLLV TFYMTFALLL LLLCSHVVSA RYHHHGHRGH HNNKKQHKHN SHISYPPSIS PEPSPSAGDE GVYDVRSFGA VGDGVTDDTE GFKAAWDAAC
101: QVQSAVIHVP LGYSFMIQST IFTGPCQSGL VFQLEGTIMP PDGPESWPSK TSKRQWLVFY RVNELSLQGG GVIDGRGEEW WNLPCKPHKG PKGSTLPGPC
201: DSPIAIRFFM SSNLTVQGIK MKNSPQFNFR FDNCKNVHIE SLHITAPIWS PNTDGIHIEQ TSNVEIYDSL ISNGDDCVSI GAGCYDVDIR NLTCGPGGHG
301: ISIGSLGNHN SRACVSNITV RDSVIKQSDN GVRIKTWQGG FGAVSGVSFL NIHMDNVRNP IIIDQFYCLS KDCSNRTSAV SVSDIEYSSI KGTYDIRSPP
401: MRFACSDTIP CTNITLSDIE LLPAKGELVL DPFCWNAYGG QETLTIPPIF CLLEGNPPKV FENNDLGYCS SS

Best Arabidopsis Sequence Match ( AT1G02460.1 )
(BLAST)

001: MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S

Arabidopsis Description

At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.