Factsheet for Solyc03g116580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23567	Soybean	extracellular	50.34	54.86
KRH09740	Soybean	extracellular	50.57	52.0
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	38.44	45.28
Solyc08g060970.2.1	Tomato	nucleus	38.9	42.82
Solyc12g009420.1.1	Tomato	extracellular	37.3	40.05
TraesCS2A01G405100.1	Wheat	extracellular	38.22	40.05
TraesCS2B01G423400.1	Wheat	plastid	31.81	39.6
TraesCS2D01G402100.1	Wheat	extracellular	36.16	39.01
GSMUA_Achr11P...	Banana	extracellular	37.07	38.94
TraesCS2D01G402200.1	Wheat	extracellular	34.78	38.87
TraesCS2D01G402000.1	Wheat	extracellular	37.99	38.78
TraesCS2B01G423300.1	Wheat	extracellular	35.47	38.65
TraesCS2B01G423200.1	Wheat	extracellular	37.53	38.59
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	35.7	38.52
TraesCS2A01G405600.1	Wheat	extracellular	27.92	38.24
Solyc01g087280.1.1	Tomato	extracellular	37.07	38.12
CDY30105	Canola	extracellular	39.13	38.08
CDX75843	Canola	extracellular	39.36	37.97
Solyc03g113230.1.1	Tomato	extracellular	35.7	37.96
AT3G15720.1	Thale cress	extracellular	39.59	37.94
Bra027210.1-P	Field mustard	extracellular	39.59	37.94
Bra027211.1-P	Field mustard	extracellular	39.13	37.92
Bra001605.1-P	Field mustard	extracellular	39.13	37.83
CDY58462	Canola	extracellular	39.13	37.75
CDX97704	Canola	extracellular	39.36	37.72
GSMUA_Achr4P13200_001	Banana	extracellular	36.38	37.68
HORVU2Hr1G096130.1	Barley	extracellular	34.78	37.53
Solyc04g015530.1.1	Tomato	cytosol	33.64	37.5
CDX97703	Canola	extracellular	38.67	37.39
CDY30107	Canola	extracellular	38.9	37.28
KXG26899	Sorghum	extracellular	35.47	36.9
GSMUA_Achr9P22320_001	Banana	extracellular	34.78	36.8
TraesCS2D01G402300.1	Wheat	extracellular	27.69	36.34
Zm00001d039668_P001	Maize	plastid	35.47	35.47
Solyc06g068040.2.1	Tomato	nucleus	34.32	34.32
Solyc09g098270.2.1	Tomato	cytosol	33.87	34.18
Solyc03g116500.2.1	Tomato	nucleus	35.24	34.07
Os01t0172900-00	Rice	nucleus	22.43	33.22
Solyc01g100980.2.1	Tomato	extracellular	35.01	32.14
Solyc07g015870.2.1	Tomato	extracellular	32.95	32.07
Solyc04g025440.2.1	Tomato	extracellular	33.64	31.96
Solyc04g008230.2.1	Tomato	nucleus	35.24	31.43
Solyc01g079130.1.1	Tomato	extracellular	33.41	30.93
Solyc05g005170.2.1	Tomato	nucleus	35.47	30.51
Solyc10g080210.1.1	Tomato	extracellular	31.81	30.42
Solyc05g005040.2.1	Tomato	extracellular	31.58	29.3
GSMUA_Achr4P06370_001	Banana	extracellular	38.9	22.55

Protein Annotations

MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	UniProt:K4BLG0	PFAM:PF00295	ScanProsite:PS00502
PANTHER:PTHR31375	PANTHER:PTHR31375:SF42	InterPro:PbH1	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc03g116580.2	EnsemblPlants:Solyc03g116580.2.1	TMHMM:TMhelix	UniParc:UPI0002768F28	SEG:seg

Description

No Description!

Coordinates

chr3:-:65933555..65937245

Molecular Weight (calculated)

47055.6 Da

IEP (calculated)

7.893

GRAVY (calculated)

0.054

Length

437 amino acids

Sequence
(BLAST)

001: MISNSQFYLV TFLVLLCIVS SVRSADIKTF NVIDFGAVGD GRTDDLPAFL KAWEAVCQSE SSRVILVIPK RKKFLLKPSE FDGPCKPSSI HIQVSGNIIA
101: PNSKSAWDGA ATNAWLTFAN IDHLTVNGNG VFDGLGHIWW SNACTNDNTS PETQCKGPTA LIFRRCDQLR VRGVTMIRSP RSHIILTACN EVSIANIRIM
201: SPGDSLNTDG IGVSGSTNVQ IQNSLIATGF GKDQLHPKKI WHRQPTLMQV PMVDSTIQTS DDCIAIGGGS SNISISGITC GPGHGISIGS LGEGGFEVVE
301: DVNVRNCTMK DTLAGVRIKT WQGGEGYARR IAFEGIVFVA VNNPIIIDQF YCPSRVNCKK DTAAVALSDI TFRGILGTSL MDEVINLSCS ETVGCKNILV
401: DRVYISSVNG NPVHAKCINA HGRYTHTSPA VKCLLPP

Best Arabidopsis Sequence Match ( AT4G35670.1 )
(BLAST)

001: MKTILDISIL INFLCFGIVY GKNYNVLNFD AKGDGQTDDS EAFLQAWTAA CGGDGDIKTL LIPSGKTFLL QPTVFQGPCK SSSIKVQLDG TIVAPSDKFA
101: WSDPISRMWI KFSTVSGLII VGSGTIDSRG SSFWELNLKA SQRPTALHIS KCDNLRINGI TSIDSPKNHI SIKTCNTVAI SNINLFAPET SPNTDGIDIS
201: DSTNINIFDS TIQTGDDCIA INSGSSNINI TGINCGPGHG ISVGSLGAGG AEAKVSDVQV THCTFNQTTN GARIKTWLGG QGYARNISFT DITLVNTKNP
301: IIIDQHYIDK GRLTEESAVA ISNVKFVDFR GTSSNKNAIT LKCSETTHCV DVVMDGIDIT MANGGKPKVN CQYVDGESSD TDLMRDCFKN NTSS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JN47]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.