Factsheet for Bra027211.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97703	Canola	extracellular	97.56	97.35
Bra027210.1-P	Field mustard	extracellular	88.03	87.06
Bra001605.1-P	Field mustard	extracellular	82.71	82.52
AT3G15720.1	Thale cress	extracellular	76.72	75.88
VIT_09s0002g06650.t01	Wine grape	extracellular	39.91	44.55
VIT_09s0002g06610.t01	Wine grape	extracellular	37.69	43.7
Bra025099.1-P	Field mustard	extracellular	38.58	43.5
Bra025103.1-P	Field mustard	extracellular	38.14	43.0
PGSC0003DMT400056828	Potato	extracellular	37.92	42.96
VIT_09s0002g06580.t01	Wine grape	cytosol	36.81	42.46
PGSC0003DMT400008955	Potato	extracellular	32.15	41.67
KRH23567	Soybean	extracellular	35.7	40.15
Solyc03g116580.2.1	Tomato	extracellular	37.92	39.13
HORVU2Hr1G096130.1	Barley	extracellular	35.03	39.01
Bra008493.1-P	Field mustard	extracellular	33.48	38.72
Bra008572.1-P	Field mustard	extracellular	37.25	38.71
TraesCS2B01G423300.1	Wheat	extracellular	34.37	38.65
Bra023600.1-P	Field mustard	extracellular	36.59	38.55
GSMUA_Achr11P...	Banana	extracellular	35.48	38.46
KRH09740	Soybean	extracellular	36.14	38.35
TraesCS2D01G402100.1	Wheat	extracellular	33.92	37.78
KXG26899	Sorghum	extracellular	35.03	37.62
Bra004655.1-P	Field mustard	extracellular	35.7	37.62
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	33.7	37.53
GSMUA_Achr4P13200_001	Banana	extracellular	35.03	37.44
TraesCS2B01G423400.1	Wheat	plastid	29.05	37.32
Bra003286.1-P	Field mustard	extracellular	35.48	36.95
Bra016911.1-P	Field mustard	extracellular	35.26	36.72
Bra029690.1-P	Field mustard	cytosol	32.82	36.45
TraesCS2A01G405100.1	Wheat	extracellular	33.7	36.45
Bra011341.1-P	Field mustard	cytosol	31.71	36.39
TraesCS2A01G405600.1	Wheat	extracellular	25.72	36.36
GSMUA_Achr9P22320_001	Banana	extracellular	33.26	36.32
TraesCS2D01G402200.1	Wheat	extracellular	31.49	36.32
Bra007332.1-P	Field mustard	extracellular	34.15	35.65
Bra025631.1-P	Field mustard	extracellular	33.26	35.55
TraesCS2B01G423200.1	Wheat	extracellular	33.48	35.53
TraesCS2D01G402000.1	Wheat	extracellular	33.26	35.05
TraesCS2D01G402300.1	Wheat	extracellular	25.72	34.83
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	34.59	34.82
Bra001279.1-P	Field mustard	extracellular	33.48	34.55
Bra027926.1-P	Field mustard	extracellular	33.04	34.25
Bra024602.1-P	Field mustard	cytosol	32.59	33.26
Bra008748.1-P	Field mustard	extracellular	31.71	32.57
Bra003555.1-P	Field mustard	extracellular	31.93	32.21
Bra012375.1-P	Field mustard	cytosol	31.71	32.06
Zm00001d039668_P001	Maize	plastid	31.04	32.04
Bra016213.1-P	Field mustard	extracellular	32.82	31.69
Bra000911.1-P	Field mustard	extracellular, vacuole	34.15	31.69
Bra025216.1-P	Field mustard	extracellular	32.82	31.49
Bra016345.1-P	Field mustard	extracellular	32.59	31.41
Bra032600.1-P	Field mustard	extracellular	32.82	30.14
Bra040077.1-P	Field mustard	extracellular	24.39	30.14
Bra018707.1-P	Field mustard	extracellular	31.26	29.87
Bra033328.1-P	Field mustard	extracellular	32.15	29.53
Bra031724.1-P	Field mustard	extracellular	30.6	26.8
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	30.82	26.18
Os01t0172900-00	Rice	nucleus	17.07	26.1
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	29.93	25.33
Bra027148.1-P	Field mustard	extracellular	29.05	24.44
GSMUA_Achr4P06370_001	Banana	extracellular	34.15	20.42

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra027211	EnsemblPlants:Bra027211.1	EnsemblPlants:Bra027211.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4EEJ9	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF42	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI000254793E	SEG:seg	:	:	:

Description

AT3G15720 (E=2e-197) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA05:+:19730007..19732321

Molecular Weight (calculated)

48480.6 Da

IEP (calculated)

6.302

GRAVY (calculated)

-0.104

Length

451 amino acids

Sequence
(BLAST)

001: MQTKAWFLNF SVFILKIFAY SKALDVTQYG AFGDGVTDDS QAFLKAWEAV CSGTGDGQLI VPAGMSFMLQ PLKFQGSCKP TPIAVQILGT LVASSRGEWK
101: GDKNQWILFS DIEGLVVDGN GKINGQGSSW WQHKGSRPTG LKFKNCNNLR LRGLTHVDSA MAHIHINGCN DVTISNLRIN APESSPNTDG IDIAASSNVV
201: IQDCVIATGD DCIAINSGTA NIRISGIDCG PGHGISIGSL GKDEGVASVE DICVQNCNFR GTMNGARIKT WPGGSGYARR ITFNGITLDN VENPIIIDQH
301: YKHEDSDKST DDKSSAVEVS KVVYSNFVGT SKSEYGVNFR CSERAPCTEI FMKDVKIKTA SSGMGQVAQG QCLNVRGGVT TLAVPGLECL ALSTDWGTLP
401: EQACMLPQQS GQPDTRPSQD PLWVIWVYGS GGKHLGVYSV VLTSLINLFW F

Best Arabidopsis Sequence Match ( AT3G15720.1 )
(BLAST)

001: MKKKTWFLNF SLFFLQIFTS SNALDVTQFG AVGDGVTDDS QAFLKAWEAV CSGTGDGQFV VPAGMTFMLQ PLKFQGSCKS TPVFVQMLGK LVAPSKGNWK
101: GDKDQWILFT DIEGLVIEGD GEINGQGSSW WEHKGSRPTA LKFRSCNNLR LSGLTHLDSP MAHIHISECN YVTISSLRIN APESSPNTDG IDVGASSNVV
201: IQDCIIATGD DCIAINSGTS NIHISGIDCG PGHGISIGSL GKDGETATVE NVCVQNCNFR GTMNGARIKT WQGGSGYARM ITFNGITLDN VENPIIIDQF
301: YNGGDSDNAK DRKSSAVEVS KVVFSNFIGT SKSEYGVDFR CSERVPCTEI FLRDMKIETA SSGSGQVAQG QCLNVRGAST IAVPGLECLE LSTDMFSSAQ
401: LLEQTCMSAQ SVQPRTTTQP MQDPIWVFQS RGKQLRVYNI AILVSFISLV TYILAR

Arabidopsis Description

Probable polygalacturonase At3g15720 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW07]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.