Factsheet for Bra040077.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39884	Canola	extracellular	98.36	80.67
AT4G32380.1	Thale cress	extracellular	59.45	47.9
Bra011341.1-P	Field mustard	cytosol	50.14	46.56
Bra025103.1-P	Field mustard	extracellular	35.34	32.25
Bra025099.1-P	Field mustard	extracellular	35.34	32.25
PGSC0003DMT400056828	Potato	extracellular	31.51	28.89
Bra023600.1-P	Field mustard	extracellular	33.15	28.27
TraesCS2B01G423400.1	Wheat	plastid	26.58	27.64
TraesCS2A01G405600.1	Wheat	extracellular	23.84	27.27
TraesCS2D01G402200.1	Wheat	extracellular	28.49	26.6
PGSC0003DMT400008955	Potato	extracellular	25.21	26.44
TraesCS2D01G402300.1	Wheat	extracellular	24.11	26.43
KXG26899	Sorghum	extracellular	30.14	26.19
Bra008572.1-P	Field mustard	extracellular	30.96	26.04
Bra008493.1-P	Field mustard	extracellular	27.67	25.9
Bra001605.1-P	Field mustard	extracellular	31.78	25.66
TraesCS2A01G405100.1	Wheat	extracellular	29.32	25.66
GSMUA_Achr11P...	Banana	extracellular	29.04	25.48
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	28.22	25.43
Bra027210.1-P	Field mustard	extracellular	31.51	25.22
TraesCS2B01G423300.1	Wheat	extracellular	27.67	25.19
TraesCS2D01G402100.1	Wheat	extracellular	27.95	25.19
HORVU2Hr1G096130.1	Barley	extracellular	27.67	24.94
TraesCS2D01G402000.1	Wheat	extracellular	28.77	24.53
TraesCS2B01G423200.1	Wheat	extracellular	28.49	24.47
Bra027211.1-P	Field mustard	extracellular	30.14	24.39
Bra004655.1-P	Field mustard	extracellular	28.49	24.3
Bra029690.1-P	Field mustard	cytosol	26.85	24.14
Bra007332.1-P	Field mustard	extracellular	28.49	24.07
Bra001279.1-P	Field mustard	extracellular	28.77	24.03
Bra003286.1-P	Field mustard	extracellular	28.49	24.02
Bra016911.1-P	Field mustard	extracellular	27.95	23.56
GSMUA_Achr4P13200_001	Banana	extracellular	27.12	23.46
GSMUA_Achr9P22320_001	Banana	extracellular	26.3	23.24
Bra003555.1-P	Field mustard	extracellular	27.95	22.82
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	27.67	22.54
Bra025631.1-P	Field mustard	extracellular	26.03	22.51
Bra027926.1-P	Field mustard	extracellular	26.3	22.07
Bra008748.1-P	Field mustard	extracellular	26.3	21.87
Bra024602.1-P	Field mustard	cytosol	25.48	21.04
Bra016213.1-P	Field mustard	extracellular	26.85	20.98
Zm00001d039668_P001	Maize	plastid	24.93	20.82
Bra012375.1-P	Field mustard	cytosol	24.93	20.4
Bra016345.1-P	Field mustard	extracellular	25.75	20.09
Bra032600.1-P	Field mustard	extracellular	26.3	19.55
Bra033328.1-P	Field mustard	extracellular	25.75	19.14
Bra025216.1-P	Field mustard	extracellular	23.84	18.51
Bra018707.1-P	Field mustard	extracellular	23.84	18.43
Os01t0172900-00	Rice	nucleus	14.79	18.31
Bra000911.1-P	Field mustard	extracellular, vacuole	23.56	17.7
Bra027148.1-P	Field mustard	extracellular	25.21	17.16
Bra031724.1-P	Field mustard	extracellular	24.11	17.09
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	24.66	16.89
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	23.56	16.2
GSMUA_Achr4P06370_001	Banana	extracellular	28.77	13.93

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra040077	EnsemblPlants:Bra040077.1	EnsemblPlants:Bra040077.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4FG52	PFAM:PF00295	PANTHER:PTHR31375
PANTHER:PTHR31375:SF42	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0002546B2B

Description

AT4G32370 (E=2e-060) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA08:-:13086655..13089895

Molecular Weight (calculated)

39513.4 Da

IEP (calculated)

6.361

GRAVY (calculated)

-0.194

Length

365 amino acids

Sequence
(BLAST)

001: MGFQLLISVL LVSSFYAHYG DSDSEFISVR DFLSDSGNTN ADQSQAIQDA WKALCAGKSK SLVIHANEVY TLLPQVFQGP CVASNPHIQI DGKIEAPKLV
101: KDWGSNKPEN WLSFDKVSGL TITGSGLLDP HGESWWSTVK FDSRPQALQF NRCNNLIYNG LTQRNSPKNH ISISNCIQAT LSNLHLIAPA NSPNTDGIDI
201: SLSQQINIFS SAIQTGSLGE GGATETVENV HVQHCTFTGA DNAARIKTWP GSAVKVSDVT FRYFRGTCAQ PIAIKLDCDK IGCGNIVLEH INITSSSPQT
301: SPSAICRFAD VTSSFVNIDM KCVNHADLQG PSPSPELPSQ YDQPHAQLPQ ASAPHAQARP FLSFL

Best Arabidopsis Sequence Match ( AT4G32380.2 )
(BLAST)

001: MGFEILLSVL LIASYHLQYG NGRMILTMKD FISNSNSTNV DHSQAFQNAW RALCGGKGGS ASFVIQAHET YTIQPQLLEG PCMPRNIHIQ IDGTIEAPKM
101: ANDWGRNKLD CWLCFEKVTG LVLTGSGVLN THGESWWSSV ALQSRPVAVR FFGCQNILYN GLTQINSPRN HITILDSNNA TLSNLHLIAP ASSPNTDGID
201: ISHSQNINIM SSTIKTGDDC VAIKRNSYNI NVTYVTCGPG HGISIGSLGE GGASEVVQNV NVRHCTFTGT QNGARIKTWP ATAVKVSDVT FRSFTGTCAA
301: PIAIKLDCDP NTGCDNIVME QINIASSSPK TPLTSYCKFA HVVSRFVSIP ITCSFHTEDS QPASLNPQPS APYAISPTTP HTQPHAPTTQ PPLFFRFYTN
401: FKAFLGRLGR NC

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT4G32380]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.