Factsheet for Bra016911.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06902	Canola	extracellular	99.77	99.77
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	94.92	91.74
Bra004655.1-P	Field mustard	extracellular	86.37	87.38
AT2G41850.1	Thale cress	extracellular	83.37	83.37
Bra007332.1-P	Field mustard	extracellular	69.52	69.68
Bra003286.1-P	Field mustard	extracellular	67.21	67.21
KRH71979	Soybean	extracellular	55.66	56.31
VIT_08s0007g07750.t01	Wine grape	extracellular	54.04	52.94
VIT_08s0007g07760.t01	Wine grape	extracellular	53.12	52.87
Solyc04g015530.1.1	Tomato	cytosol	47.58	52.55
VIT_08s0007g08330.t01	Wine grape	extracellular	53.58	52.25
VIT_08s0007g07770.t01	Wine grape	extracellular	52.89	51.81
VIT_08s0007g07780.t01	Wine grape	extracellular	51.73	51.61
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	45.5	49.62
Bra029690.1-P	Field mustard	cytosol	46.42	49.51
KRH33163	Soybean	extracellular, plastid	54.5	49.48
KRH66955	Soybean	extracellular	51.27	47.84
Bra001279.1-P	Field mustard	extracellular	48.04	47.6
Solyc10g080210.1.1	Tomato	extracellular	50.12	47.48
HORVU0Hr1G038940.1	Barley	cytosol	43.65	46.78
PGSC0003DMT400070039	Potato	cytosol	43.65	46.1
TraesCS4A01G066700.1	Wheat	extracellular	45.27	45.27
TraesCS4B01G244300.1	Wheat	extracellular	45.03	45.03
TraesCS4D01G243600.1	Wheat	extracellular	45.03	45.03
GSMUA_Achr1P22940_001	Banana	extracellular	45.03	44.22
KXG39856	Sorghum	extracellular	43.88	44.19
Os03t0216800-01	Rice	extracellular	44.34	43.84
KRG95273	Soybean	extracellular	52.19	43.21
Bra003555.1-P	Field mustard	extracellular	43.42	42.06
Zm00001d048079_P001	Maize	extracellular	42.96	40.26
Bra024602.1-P	Field mustard	cytosol	39.95	39.14
Bra016213.1-P	Field mustard	extracellular	41.34	38.33
Bra027926.1-P	Field mustard	extracellular	38.11	37.93
Bra016345.1-P	Field mustard	extracellular	40.88	37.82
Bra025099.1-P	Field mustard	extracellular	34.87	37.75
Bra025103.1-P	Field mustard	extracellular	34.64	37.5
Bra012375.1-P	Field mustard	cytosol	38.57	37.44
Bra023600.1-P	Field mustard	extracellular	36.95	37.38
Bra008572.1-P	Field mustard	extracellular	36.95	36.87
Bra025631.1-P	Field mustard	extracellular	35.8	36.73
Bra008748.1-P	Field mustard	extracellular	36.49	35.99
Bra027211.1-P	Field mustard	extracellular	36.72	35.26
Bra027210.1-P	Field mustard	extracellular	36.49	34.65
Bra001605.1-P	Field mustard	extracellular	35.8	34.29
Bra008493.1-P	Field mustard	extracellular	30.48	33.85
Bra018707.1-P	Field mustard	extracellular	36.49	33.47
Bra011341.1-P	Field mustard	cytosol	30.25	33.33
Bra000911.1-P	Field mustard	extracellular, vacuole	37.18	33.13
Bra025216.1-P	Field mustard	extracellular	35.8	32.98
Bra032600.1-P	Field mustard	extracellular	36.72	32.38
Bra033328.1-P	Field mustard	extracellular	36.72	32.38
Bra031724.1-P	Field mustard	extracellular	33.72	28.35
Bra040077.1-P	Field mustard	extracellular	23.56	27.95
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	33.72	27.5
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	33.49	27.2
Bra027148.1-P	Field mustard	extracellular	33.49	27.05

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.1	EnsemblPlantsGene:Bra016911	EnsemblPlants:Bra016911.1	EnsemblPlants:Bra016911.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4DK82	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF3	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI0002543706	:	:	:	:

Description

AT2G41850 (E=3e-215) PGAZAT, ADPG2 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase

Coordinates

chrA04:-:17638959..17641119

Molecular Weight (calculated)

46582.9 Da

IEP (calculated)

8.426

GRAVY (calculated)

-0.332

Length

433 amino acids

Sequence
(BLAST)

001: MAHCCTVLTG LLVWSLFMLS WCEASRNNIN RYDHSYGTFK SNSLIKRRDD ITRLKSVARA SLRLPTTVSV SDFGAKGDGK TDDTQAFVNA WKKACSSSGA
101: VNLLVPEGKT YFLKSLRLNG PCKSVLTVQI LGTLSASQQR SDYEDLSKWI TFDGVNSLTV DGGATGTVNG NGETWWENSC KRNEAKKCTK APTALTFYNS
201: KNLRVNNLRV KDAQQIQISI EKCSNVQVSN VEVTAPADSP NTDGIHITNT QNIQVSNSII GTGDDCISIE SGSQNVKIND LTCGPGHGIS IGSLGDDNSK
301: AFVSGVTVDG AKLSGTDNGV RIKTYQGGSG TASNIIFQNI QMENVKNPII IDQDYCDKSK CTEQKSAVQI KNVVYRNISG TSASDIAITF NCSKNYPCQG
401: IVLDKVNIKG GKASCSNANV MDKDGVLPQC KST

Best Arabidopsis Sequence Match ( AT2G41850.1 )
(BLAST)

001: MARCTNLVTV FLLWALLMFS WCKASRISPN VYDHSYKRFK SDSLIKRRED ITGLRSFVRA SLRTPTTVSV SDFGAKGDGK TDDTQAFVNA WKKACSSNGA
101: VNLLVPKGNT YLLKSIQLTG PCNSILTVQI FGTLSASQKR SDYKDISKWI MFDGVNNLSV DGGDTGVVDG NGETWWQNSC KRNKAKPCTK APTALTFYNS
201: KSLIVKNLKV RNAQQIQISI EKCSNVQVSN VVVTAPADSP NTDGIHITNT QNIRVSESII GTGDDCISIE SGSQNVQIND ITCGPGHGIS IGSLGDDNSK
301: AFVSGVTVDG AKLSGTDNGV RIKTYQGGSG TASNIIFQNI QMDNVKNPII IDQDYCDKSK CTTEKSAVQV KNVVYRDISG TSASENAITF NCSKNYPCQG
401: IVLDRVNIKG GKATCTNANV VDKGAVLPQC NST

Arabidopsis Description

ADPG2Polygalacturonase ADPG2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY29]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.